Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   Q4V64_RS15875 Genome accession   NZ_CP130630
Coordinates   3596408..3598141 (+) Length   577 a.a.
NCBI ID   WP_124442487.1    Uniprot ID   -
Organism   Streptomyces sp. NL15-2K     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3591408..3603141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4V64_RS15820 (Q4V64_15815) - 3591489..3591761 (+) 273 WP_216377659.1 hypothetical protein -
  Q4V64_RS15825 (Q4V64_15820) cyaB 3591821..3592375 (-) 555 WP_124442490.1 class IV adenylate cyclase -
  Q4V64_RS15830 (Q4V64_15825) - 3592390..3592731 (-) 342 WP_253267192.1 hypothetical protein -
  Q4V64_RS15835 (Q4V64_15830) - 3592749..3592934 (+) 186 WP_253267191.1 hypothetical protein -
  Q4V64_RS15840 (Q4V64_15835) - 3592931..3593158 (+) 228 WP_253267190.1 hypothetical protein -
  Q4V64_RS15845 (Q4V64_15840) - 3593346..3593516 (+) 171 WP_172629382.1 hypothetical protein -
  Q4V64_RS15865 (Q4V64_15860) - 3594267..3594572 (+) 306 WP_124442489.1 YtxH domain-containing protein -
  Q4V64_RS15870 (Q4V64_15865) - 3594746..3596200 (+) 1455 WP_124442488.1 FGGY family carbohydrate kinase -
  Q4V64_RS15875 (Q4V64_15870) rcrP 3596408..3598141 (+) 1734 WP_124442487.1 ABC transporter ATP-binding protein Regulator
  Q4V64_RS15880 (Q4V64_15875) rcrQ 3598141..3600069 (+) 1929 WP_124442486.1 ABC transporter ATP-binding protein Regulator
  Q4V64_RS15885 (Q4V64_15880) - 3600186..3601484 (-) 1299 WP_124442485.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62718.96 Da        Isoelectric Point: 5.7460

>NTDB_id=786254 Q4V64_RS15875 WP_124442487.1 3596408..3598141(+) (rcrP) [Streptomyces sp. NL15-2K]
MLIRLLRTYLRPYKRPITLLVLLQLLQTCATLYLPTLNADIIDDGVVKGDTGYILGYGALMIGISLVQVVCNIGAVYYGA
QTASALGRDVRAAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPVMGICVTLIVRRLRPLFRSMQERLDTVNRVLREQITGNRVIRAFVRDEYEQHRFRKANTDLTDMALGTGRLLAL
MFPMVMTVVNLSSIAVVWFGAHRIDSGGMQIGGLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PTAPVRELRRHGHLELRGAGFRYPGAEEPVLRSVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVA
TIDPILLAKTVGMVPQRPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVERLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALADETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=786254 Q4V64_RS15875 WP_124442487.1 3596408..3598141(+) (rcrP) [Streptomyces sp. NL15-2K]
GTGCTCATACGACTTCTGCGTACCTACCTCAGGCCTTACAAGAGACCCATCACCCTGCTGGTGCTGCTGCAGTTGCTGCA
GACCTGCGCCACGCTCTACCTGCCCACGCTGAACGCCGACATCATCGACGACGGTGTGGTGAAGGGGGACACCGGCTACA
TCCTCGGTTACGGCGCCCTGATGATCGGCATCTCGCTGGTACAGGTCGTGTGCAACATCGGTGCCGTGTACTACGGCGCG
CAGACCGCCTCGGCGCTCGGCCGGGACGTCCGGGCAGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCGCGCGAGGTCGG
CCAGTTCGGCGCGCCCTCGCTGATCACCCGGACGACGAACGACGTCCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CGCTGATGGTGTCCGCGCCGATCATGTGCGTGGGGGGCATCGTGCTGGCGCTCGGTCTGGACGTGCCGCTGTCCGGGGTG
CTGGTCGCGGTGGTGCCGGTGATGGGCATCTGTGTGACGCTGATCGTGCGCCGGCTGCGCCCGCTGTTCCGGTCCATGCA
GGAGCGCCTGGACACGGTGAACCGGGTGCTGCGTGAGCAGATCACCGGCAACCGGGTGATCCGCGCGTTCGTGCGGGACG
AGTACGAGCAGCACCGCTTCCGGAAGGCGAACACCGATCTGACCGACATGGCGCTGGGCACCGGGCGGCTGCTCGCGCTG
ATGTTCCCGATGGTCATGACGGTGGTGAACCTGTCGTCGATCGCCGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGGCCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACGTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGACACCTCGTCGAGCGTGGTTCCG
CCGACGGCTCCCGTGCGCGAGCTGCGCCGCCACGGCCATCTGGAGCTCCGCGGGGCGGGCTTCCGCTACCCGGGGGCCGA
GGAGCCGGTGCTGAGGTCGGTCGACCTGGTGGCCCGGCCCGGTGAGACGACCGCCGTGATCGGCTCGACCGGCAGCGGGA
AGTCCACGCTGCTCGGGCTGGTGCCGCGGCTGTTCGACGCGACCGACGGCGAGGTGCTCGTCGACGGCGTGGACGTGGCG
ACCATCGACCCGATCCTGCTGGCGAAGACGGTCGGGATGGTGCCGCAGCGGCCGTACCTGTTCGCGGGCACGGTGGCCAC
CAACCTGCGCTACGGCAACCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGGAGCGGCTGGAGGGCGGGCTCGACGCGCCGATCGCGCAGGGCGGCACGAATGTGTCGGGCGGTCAGCGCCAGCGTCTC
GCCATCGCCCGCACCCTCGTCCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCCCTGCGTGCGGCGCTCGCCGACGAGACCGCAGAGGCGACCGTCGTCATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTCGTCCTCGACGAGGGGCGGGTCGTCGGCACCGGACGGCACCACGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.863

100

0.402