Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   PGW99_RS01935 Genome accession   NZ_CP117520
Coordinates   378936..379817 (+) Length   293 a.a.
NCBI ID   WP_273778416.1    Uniprot ID   -
Organism   Acinetobacter sp. GSS19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 373936..384817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW99_RS01905 - 373955..374452 (+) 498 WP_273778410.1 YcxB family protein -
  PGW99_RS01910 - 374461..375099 (+) 639 WP_273778411.1 fumarylacetoacetate hydrolase family protein -
  PGW99_RS01915 - 375147..376391 (-) 1245 WP_273778412.1 YihY family inner membrane protein -
  PGW99_RS01920 wrbA 376503..377096 (+) 594 WP_273778413.1 NAD(P)H:quinone oxidoreductase -
  PGW99_RS01925 - 377186..377899 (-) 714 WP_273778414.1 DUF3108 domain-containing protein -
  PGW99_RS01930 - 378026..378700 (-) 675 WP_273779399.1 hypothetical protein -
  PGW99_RS01935 tonB2 378936..379817 (+) 882 WP_273778416.1 TonB family protein Machinery gene
  PGW99_RS01940 ybeY 379872..380357 (-) 486 WP_273778417.1 rRNA maturation RNase YbeY -
  PGW99_RS01945 - 380370..381449 (-) 1080 WP_273778419.1 PhoH family protein -
  PGW99_RS01950 miaB 381485..382939 (-) 1455 WP_273778420.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33260.90 Da        Isoelectric Point: 8.3697

>NTDB_id=786216 PGW99_RS01935 WP_273778416.1 378936..379817(+) (tonB2) [Acinetobacter sp. GSS19]
MVKKALFKSSFTAFWWKDPIFVGAVTFAVILHALILAIQFAMPEPSEAASKDIAITLRPSADKVQEADFLAQADQQGAGK
FQEAHRMSSDMSVPMQDQTNGEQPNETLESMQQQRELKFEEKVLMTVLSWQKQAEEKQRKKALEELQSQFQAKAAMVASL
EAQYLQRQQNFSRQQKIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPEQAKQQRLSGEVRLMVALNSQGGIRAITLL
ESSGHPILDEAAKASVRKGAPFGRFDANMREISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 882 bp        

>NTDB_id=786216 PGW99_RS01935 WP_273778416.1 378936..379817(+) (tonB2) [Acinetobacter sp. GSS19]
ATGGTAAAAAAAGCATTGTTTAAATCCAGTTTCACTGCATTTTGGTGGAAAGATCCGATATTTGTCGGTGCCGTGACATT
TGCTGTGATTTTGCATGCCCTGATCTTGGCCATTCAATTTGCAATGCCTGAACCGTCAGAGGCGGCGAGCAAGGATATTG
CGATCACGTTGCGTCCAAGTGCGGATAAAGTTCAGGAGGCCGATTTCCTTGCCCAAGCGGATCAGCAGGGCGCGGGAAAA
TTTCAAGAAGCTCATCGCATGTCGAGTGATATGTCTGTGCCAATGCAGGATCAGACCAATGGTGAGCAGCCTAACGAAAC
TTTAGAATCGATGCAGCAACAACGTGAGCTTAAATTCGAGGAAAAAGTGCTCATGACAGTGTTGAGCTGGCAAAAACAGG
CCGAAGAAAAGCAGCGTAAAAAAGCCCTCGAAGAGTTACAAAGTCAGTTCCAGGCGAAAGCAGCCATGGTGGCGAGTCTG
GAAGCGCAGTATTTACAACGACAGCAAAATTTTAGTCGACAGCAAAAAATTAAAACCGTCGATGGTATTCAGGCGAAACA
GGATGCTTCAGCGGCCTATCTCGACAAGTTTCGACAAAAGGTGGAGTTGTATGGCAACCGCTATTATCCGGAACAAGCCA
AACAGCAGCGCTTATCTGGTGAAGTCCGTTTGATGGTGGCACTCAATTCACAGGGTGGAATCCGTGCGATCACTCTGCTG
GAAAGTTCAGGTCATCCTATTCTGGATGAAGCAGCAAAAGCTTCTGTGCGTAAGGGTGCACCTTTTGGACGTTTTGATGC
CAACATGCGCGAGATTTCCGAGCTGAGAATTATCCGGACCTGGCGTTTTGATCCTGCAGAAGCAGAATTTGAAGTTCATT
AA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(206-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

75.85

100

0.761