Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   PGW99_RS01040 Genome accession   NZ_CP117520
Coordinates   204193..204519 (+) Length   108 a.a.
NCBI ID   WP_273778238.1    Uniprot ID   -
Organism   Acinetobacter sp. GSS19     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 199193..209519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW99_RS01020 hemC 199887..200810 (+) 924 WP_273778234.1 hydroxymethylbilane synthase -
  PGW99_RS01025 - 200813..201586 (+) 774 WP_273778235.1 uroporphyrinogen-III synthase -
  PGW99_RS01030 - 201583..202443 (+) 861 WP_273778236.1 hypothetical protein -
  PGW99_RS01035 - 202448..203641 (+) 1194 WP_273778237.1 heme biosynthesis protein HemY -
  PGW99_RS01040 hns 204193..204519 (+) 327 WP_273778238.1 H-NS histone family protein Regulator
  PGW99_RS01045 - 204752..205387 (+) 636 WP_273778239.1 FHA domain-containing protein -
  PGW99_RS01050 - 205446..206123 (+) 678 WP_273778240.1 phosphoglycolate phosphatase -
  PGW99_RS01055 trpE 206243..207736 (+) 1494 WP_273778241.1 anthranilate synthase component I -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12457.16 Da        Isoelectric Point: 4.9923

>NTDB_id=786209 PGW99_RS01040 WP_273778238.1 204193..204519(+) (hns) [Acinetobacter sp. GSS19]
MKPDLSNLSVDELKRLQLEAEALIESKKDQAIEDAYNQIMAIAENVGLSIEQIMEMGAQKRKQTTRKSVEPRYRNRNNPE
ETWTGRGKQPRWLVAELEKGANLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=786209 PGW99_RS01040 WP_273778238.1 204193..204519(+) (hns) [Acinetobacter sp. GSS19]
ATGAAACCGGATTTAAGTAACCTTTCTGTCGATGAATTAAAACGTTTACAGCTTGAAGCTGAAGCTTTAATTGAATCAAA
AAAAGATCAAGCAATCGAAGACGCTTATAATCAGATCATGGCAATTGCTGAAAATGTTGGCTTAAGCATTGAACAGATTA
TGGAAATGGGTGCGCAAAAGCGTAAACAAACCACACGTAAATCTGTAGAGCCTCGCTACCGTAATCGTAATAATCCAGAA
GAGACCTGGACTGGTCGTGGGAAACAACCACGCTGGTTGGTTGCTGAACTGGAAAAAGGTGCAAACCTTGAGGACTTTCT
GATTTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

84.259

100

0.843