Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   PGW99_RS00665 Genome accession   NZ_CP117520
Coordinates   122408..123559 (-) Length   383 a.a.
NCBI ID   WP_273778158.1    Uniprot ID   -
Organism   Acinetobacter sp. GSS19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 117408..128559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW99_RS00640 - 117683..118229 (-) 547 Protein_126 glutathione peroxidase -
  PGW99_RS00645 - 118416..119168 (-) 753 WP_273778154.1 helix-turn-helix domain-containing protein -
  PGW99_RS00650 - 119334..120257 (+) 924 WP_273778155.1 DMT family transporter -
  PGW99_RS00655 - 120651..121220 (-) 570 WP_273778156.1 Sua5/YciO/YrdC/YwlC family protein -
  PGW99_RS00660 dprA 121262..122392 (-) 1131 WP_273778157.1 DNA-processing protein DprA Machinery gene
  PGW99_RS00665 tsaP 122408..123559 (-) 1152 WP_273778158.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PGW99_RS00670 def 123680..124210 (+) 531 WP_273778159.1 peptide deformylase -
  PGW99_RS00675 - 124295..124720 (+) 426 WP_273779380.1 DUF2946 family protein -
  PGW99_RS00680 - 124795..126840 (+) 2046 WP_273778160.1 TonB-dependent copper receptor -
  PGW99_RS00685 - 126926..128116 (+) 1191 WP_273778161.1 hypothetical protein -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 42310.66 Da        Isoelectric Point: 8.8330

>NTDB_id=786204 PGW99_RS00665 WP_273778158.1 122408..123559(-) (tsaP) [Acinetobacter sp. GSS19]
MKKVLTGMPSFNALGLKKQLLALAVCMGVGLVQLDTAQAASPNVNPPALKASAPNVYVVKKGDTLWEISGKFLKKPWRWP
EIWASNKHVKNPHWIYPGDRLLLCTLNGRPLIGKDEGDGCTGIIRRYSGRTNLQPQIRVESLNNTIPVIPLEHIKHWLER
TVILAPESLENTPYILGTADQRVLAGKGQTVYTRGNGLEVGQRYAVYREAEPYIFTDAEGKKYNAGVELLQVASGIAVQA
ENDITTLELTDSYNGEVRRGDRVLPEYDAMLPTLFYPTEAQEVTPGGQIIRVMGSISTAARNSVVTLDRGTLHGTKVGQV
FSVYQQGEIVKDPKTKETVKLPNQRIGNVMVFRTFDQLSYAYVLDSELPIKVGASIQPPLMDE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=786204 PGW99_RS00665 WP_273778158.1 122408..123559(-) (tsaP) [Acinetobacter sp. GSS19]
ATGAAAAAGGTTTTGACGGGCATGCCATCTTTTAATGCCTTGGGGTTAAAAAAACAGTTGCTCGCACTCGCAGTGTGCAT
GGGTGTTGGCCTGGTACAACTCGATACAGCTCAAGCTGCGAGTCCGAATGTCAATCCGCCTGCACTCAAGGCTAGTGCAC
CGAATGTCTATGTCGTGAAAAAAGGTGATACACTATGGGAAATTTCTGGAAAATTCCTAAAAAAACCATGGCGTTGGCCT
GAAATTTGGGCGAGCAACAAGCACGTCAAAAACCCACATTGGATCTATCCGGGTGACCGTTTACTGTTATGTACCTTAAA
TGGCCGTCCACTGATTGGTAAAGATGAAGGTGATGGCTGTACCGGCATTATTCGTCGCTATTCTGGCCGTACCAATTTGC
AACCGCAAATCCGAGTTGAATCACTCAACAACACCATTCCAGTAATTCCACTGGAACATATCAAGCACTGGCTAGAACGT
ACGGTCATCCTTGCTCCTGAGTCGTTGGAAAATACCCCTTATATCCTCGGTACAGCGGACCAACGTGTCTTGGCTGGCAA
AGGACAAACCGTTTATACGCGCGGTAATGGCCTCGAAGTTGGTCAGCGCTATGCCGTCTATCGTGAAGCTGAACCTTACA
TCTTTACCGATGCGGAAGGCAAAAAATACAACGCAGGTGTAGAACTGCTGCAAGTGGCTTCAGGGATTGCGGTTCAAGCA
GAAAATGACATCACAACGCTAGAATTAACGGACAGCTACAACGGTGAAGTGCGTCGCGGTGACCGTGTATTACCTGAATA
TGATGCCATGCTACCGACCTTGTTCTATCCGACTGAAGCTCAAGAAGTGACTCCAGGTGGCCAGATCATCCGTGTAATGG
GTTCGATTTCTACTGCAGCACGTAACAGTGTCGTCACCCTTGACCGCGGCACCCTGCATGGCACCAAAGTCGGTCAAGTC
TTTAGCGTTTACCAGCAAGGTGAAATCGTTAAAGATCCAAAAACTAAAGAGACTGTGAAACTGCCAAATCAACGTATTGG
TAATGTTATGGTGTTCCGTACCTTTGATCAACTCAGCTATGCCTATGTACTCGATAGCGAGCTACCGATCAAAGTAGGTG
CCAGCATCCAGCCGCCATTGATGGACGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

72.396

100

0.726