Detailed information NTG0786168

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: PGW97_RS02390
• Genome accession: NZ_CP117517
• Coordinates: 505953..509339 (-)
• Length: 1128 a.a.
• NCBI ID: WP_273858507.1
• Uniprot ID: -
• Organism: Photobacterium sp. GSS17
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 500953..514339

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PGW97_RS02370	-	501481..502506 (-)	1026	WP_047886421.1	ABC transporter permease	-
PGW97_RS02375	-	502509..503495 (-)	987	WP_047886422.1	ABC transporter permease	-
PGW97_RS02380	-	503634..505316 (-)	1683	WP_273858506.1	ABC transporter substrate-binding protein	-
PGW97_RS02385	-	505670..505960 (+)	291	WP_146149664.1	hypothetical protein	-
PGW97_RS02390	chiS	505953..509339 (-)	3387	WP_273858507.1	response regulator	Regulator
PGW97_RS02395	rsmC	509654..510676 (-)	1023	WP_273858508.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
PGW97_RS02400	-	510839..511924 (-)	1086	WP_047886426.1	AI-2E family transporter	-
PGW97_RS02405	hemL	512281..513576 (-)	1296	WP_273858511.1	glutamate-1-semialdehyde 2,1-aminomutase	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 126893.92 Da
• Isoelectric Point: 6.0402

>NTDB_id=786168 PGW97_RS02390 WP_273858507.1 505953..509339(-) (chiS) [Photobacterium sp. GSS17]
MQKTTRFKRLQHTLMLAFLVLSITPLLLSALFFLRSHTTDLAEQSTNHLASLLDNKRKQLESFITARESEVQSFARSELA
NASGGRFYGLVGAYNQLGDISGQLQELGRSTYFTERLTMRAPAENGATNYASHERYRLMYKRYNWAFDEYLKRSHFSDIL
LVDLQGNIVYSANSPETFSVNLQQTTHTFQALSTTFTAISTLTRQSGHSSDQVPVVFTDFSAEPDHPDLAAWFAAPIIQQ
GYLHSYVFFKLSNRSIRDILSDTVATTNHQVQTLLVGQDHRSLLPQSTQAPATYSSPSIDQALAGNSGVGSFANFSGVPV
LSAFAPISLKGSEWALVVELPEKEAFARIRQLEKIFFAAMLTAVVLVIIASHWLSNSITAPLLRLTWAAERVSAGDLDQK
IGSTERSDEIGRLATSFARMQSSIRDKITLIREQNTELEQNLLVIRQKNNELQTADKLKDEFLATTSHELRTPLHGMVGI
AESLLAGANGPLQHSQRRQLEIIINSGQRLTNLVDDLLDYHKMRYGDLDIQRHAVDLASAVRLVLELSSHLLGNKPIRII
NQIPDDLPLVLGDEQRIEQVLYNLVGNAIKYTSEGKIILSATILQKQLRIQVVDTGQGIPAEQLEHIFEPLTQANTQSAH
YRQGSGLGLSISRQLVDLMGGRLYVSSQPMIGTTFSFTLNLASEHDIANSQLANRNLHFQAPISDPTVCELEDLPDNPDG
DLLLVVDDEPVNLQVLHNFLRLEGYRVITAESGQQALQLVDEQQPALVLLDIMMPEMSGYEVCEQLRKTYSMLDLPIIML
SALGQVQDRVRGFESGANDYLTKPFNKEELTARIGAHLKAGQTERQRLENQILAEEVARRKETEAGLLETQSRLLGLLES
TNEAILCVRNDGLIRYANSAAGKLFERTPEQLERHNLYDILATHLPEDIASRHHFHGKLMFRIGDGLSSLSTDVINLPEA
SGLQRMFIFDNHGPTEEHRIKVLENAVDVLSGFAFNRDRHSLDQLRHLGEEFSELADRLDDKGGSKHDTLRELLVDTMKT
TLGVWERYTRKTKFELAEESGLWRVYLDRSTLQTRTLDKYLHLETLPKTPRWRTVLSTVDFVLERCQVPADEREQLQLMR
QQLQHLIS

Nucleotide

• Length: 3387 bp

>NTDB_id=786168 PGW97_RS02390 WP_273858507.1 505953..509339(-) (chiS) [Photobacterium sp. GSS17]
ATGCAGAAGACTACCCGTTTCAAGCGACTGCAGCATACCCTAATGCTGGCATTTCTCGTTCTCAGTATCACTCCCCTGCT
CCTCTCAGCATTATTTTTCCTTCGCTCCCACACCACTGATTTAGCAGAGCAAAGTACCAATCACCTGGCGTCATTGCTCG
ACAACAAACGCAAGCAGTTGGAGAGCTTCATTACGGCCCGGGAATCGGAAGTGCAGAGCTTTGCCCGCTCTGAGCTGGCC
AATGCCAGTGGCGGACGGTTCTACGGCTTGGTCGGTGCTTATAACCAACTGGGTGACATCAGCGGGCAATTGCAGGAACT
CGGTCGCAGCACATATTTTACGGAGCGGCTGACCATGAGGGCGCCGGCTGAGAACGGAGCCACGAATTACGCCAGCCATG
AACGATACCGGCTGATGTACAAACGCTATAACTGGGCTTTCGACGAATACCTTAAGCGGTCACATTTCAGCGACATTCTG
CTGGTCGACTTACAGGGCAATATTGTCTATTCCGCCAACAGTCCCGAGACATTCAGCGTCAACCTGCAGCAAACCACCCA
CACGTTTCAGGCACTGAGCACTACTTTTACCGCGATTTCGACCCTCACCCGGCAATCCGGCCACAGCTCGGATCAGGTTC
CGGTCGTATTCACGGATTTCAGTGCTGAGCCAGATCACCCGGATCTCGCCGCCTGGTTTGCCGCCCCCATCATTCAGCAA
GGCTATCTGCACAGTTATGTCTTTTTTAAGCTAAGTAACCGCTCCATCCGGGACATTCTCAGCGACACCGTGGCCACAAC
CAATCATCAGGTGCAGACCCTGTTGGTAGGCCAGGATCACCGCTCATTGCTGCCGCAAAGTACTCAGGCCCCCGCGACCT
ATTCCAGCCCGAGCATCGATCAGGCACTGGCCGGCAACAGCGGCGTGGGCAGCTTTGCCAACTTCAGCGGGGTGCCGGTA
CTGAGCGCCTTCGCCCCCATCAGCCTCAAGGGCAGTGAGTGGGCGCTGGTCGTCGAGCTGCCGGAAAAAGAAGCCTTTGC
CCGCATTCGCCAGCTGGAAAAAATCTTCTTTGCGGCTATGCTGACGGCCGTGGTGCTGGTGATCATCGCTTCGCACTGGC
TCTCCAACTCCATCACCGCGCCTTTGTTGCGCCTGACCTGGGCCGCTGAGCGGGTATCCGCCGGGGATCTGGATCAGAAG
ATAGGAAGCACCGAGCGCAGCGACGAAATCGGCCGCCTGGCCACCAGCTTTGCCCGCATGCAGTCTTCCATTCGGGATAA
AATCACCCTGATCCGCGAACAAAACACGGAGCTGGAGCAAAACCTGCTGGTGATACGGCAGAAGAACAACGAGCTGCAGA
CCGCTGATAAACTGAAAGATGAGTTTCTGGCCACCACATCCCATGAACTGCGGACCCCGCTGCACGGGATGGTCGGCATC
GCCGAATCGCTGCTGGCCGGTGCCAACGGCCCGTTACAACATTCGCAACGACGCCAGCTGGAGATCATCATCAATAGCGG
CCAGCGCCTGACCAACCTGGTCGATGATCTGCTGGATTATCATAAGATGCGTTATGGCGATCTTGATATACAGCGCCATG
CGGTAGATCTGGCCTCGGCCGTGCGTCTGGTACTGGAGCTGTCCAGCCACCTACTGGGCAACAAGCCGATCCGCATCATC
AACCAGATCCCTGATGACCTGCCGCTGGTGCTGGGCGATGAGCAGCGTATCGAGCAGGTACTGTACAACCTGGTCGGTAA
CGCCATCAAATACACCTCTGAAGGTAAGATCATCCTTTCAGCCACGATTTTGCAAAAGCAGCTTCGGATTCAGGTCGTAG
ATACCGGCCAGGGGATCCCTGCCGAGCAGCTGGAGCATATCTTTGAGCCGCTGACCCAGGCCAATACGCAATCCGCCCAT
TACCGCCAGGGCTCCGGACTGGGGCTGTCCATTAGCCGCCAGCTGGTGGATTTAATGGGGGGACGCCTGTACGTCAGCAG
CCAACCGATGATAGGCACTACGTTCAGCTTCACCCTGAACCTGGCCAGCGAGCATGACATTGCTAACAGTCAGTTGGCCA
ACCGCAACCTTCACTTTCAGGCTCCGATCAGCGACCCAACGGTGTGTGAGCTGGAAGATTTACCGGATAATCCGGATGGC
GACCTGTTGCTGGTCGTGGATGATGAACCGGTCAACCTGCAAGTTCTGCATAACTTCCTGCGACTGGAAGGGTATCGGGT
GATCACTGCAGAAAGTGGCCAGCAGGCGCTTCAGCTGGTTGATGAACAACAGCCCGCACTGGTGTTGCTGGATATTATGA
TGCCGGAGATGTCCGGCTATGAAGTCTGTGAGCAACTGCGGAAAACCTACAGCATGCTGGATTTACCCATCATCATGCTT
TCTGCCCTGGGACAGGTTCAGGATCGGGTACGCGGCTTTGAATCCGGTGCCAACGATTACCTGACCAAGCCATTCAATAA
AGAAGAGCTGACCGCCCGGATCGGGGCACACCTGAAAGCTGGACAAACTGAACGCCAGCGCCTGGAAAATCAGATCTTGG
CCGAAGAAGTGGCACGGCGAAAAGAAACGGAAGCGGGCCTGCTGGAAACCCAGAGCCGCCTGCTTGGGCTGCTCGAATCC
ACCAATGAAGCGATACTCTGTGTCCGTAACGACGGCCTTATACGCTATGCCAACAGCGCCGCCGGTAAACTGTTTGAACG
CACTCCTGAGCAACTGGAGCGCCACAACCTTTACGATATTCTGGCCACTCATCTGCCAGAAGACATCGCCAGCCGCCACC
ATTTCCACGGCAAGCTGATGTTCCGCATCGGGGATGGCCTCAGTTCCCTGAGCACTGACGTGATTAACCTGCCGGAAGCC
TCCGGGTTACAGCGGATGTTTATTTTTGACAACCACGGTCCGACTGAAGAGCACCGTATCAAAGTGCTGGAAAATGCCGT
CGACGTTTTATCCGGCTTTGCCTTCAACCGTGACCGGCACAGCCTGGACCAACTCCGTCATCTGGGCGAGGAATTCAGCG
AACTGGCGGATCGCCTGGATGACAAAGGCGGCAGCAAGCACGATACCCTGCGCGAACTGCTGGTCGATACCATGAAGACC
ACCCTTGGCGTCTGGGAACGCTATACCAGGAAAACCAAATTTGAACTGGCCGAAGAAAGCGGGCTCTGGCGGGTCTACCT
CGACCGCAGTACCCTGCAAACCCGGACACTGGATAAATACCTGCACCTTGAAACTCTGCCCAAAACACCGCGCTGGCGCA
CGGTACTCAGCACCGTGGATTTTGTGCTGGAACGCTGTCAGGTGCCCGCCGATGAAAGAGAACAACTGCAACTGATGAGG
CAGCAACTGCAACACCTTATCAGCTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (724-834)

• HAMP domain (HAMP) (373-426)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (572-681)

• His Kinase A (phospho-acceptor) domain (HisKA) (459-524)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	57.345	100	0.574