Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GsuE55_RS09480 Genome accession   NZ_AP022557
Coordinates   1914894..1916762 (-) Length   622 a.a.
NCBI ID   WP_172418609.1    Uniprot ID   -
Organism   Geobacillus subterraneus strain E55-1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1909894..1921762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GsuE55_RS09445 (GsuE55_19000) - 1910122..1910760 (-) 639 WP_033018860.1 GTP pyrophosphokinase family protein -
  GsuE55_RS09450 (GsuE55_19010) - 1911125..1911514 (-) 390 WP_033843316.1 hypothetical protein -
  GsuE55_RS09455 (GsuE55_19020) - 1911651..1912241 (+) 591 WP_172418604.1 CYTH domain-containing protein -
  GsuE55_RS09460 (GsuE55_19030) - 1912238..1912834 (+) 597 WP_172418605.1 lytic transglycosylase domain-containing protein -
  GsuE55_RS09465 (GsuE55_19040) - 1912933..1913346 (+) 414 WP_172418606.1 globin -
  GsuE55_RS09470 (GsuE55_19050) spxH 1913339..1914241 (+) 903 WP_172418607.1 ClpXP adapter protein SpxH -
  GsuE55_RS09475 (GsuE55_19060) - 1914685..1914882 (+) 198 WP_172418608.1 hypothetical protein -
  GsuE55_RS09480 (GsuE55_19070) pepF 1914894..1916762 (-) 1869 WP_172418609.1 oligoendopeptidase F Regulator
  GsuE55_RS09485 (GsuE55_19080) - 1916752..1918047 (-) 1296 WP_244319323.1 competence protein CoiA family protein -
  GsuE55_RS09490 (GsuE55_19100) cls 1918600..1920108 (-) 1509 WP_172418610.1 cardiolipin synthase -
  GsuE55_RS09495 (GsuE55_19110) mecA 1920235..1920915 (-) 681 WP_033018849.1 adaptor protein MecA -

Sequence

Protein


Download         Length: 622 a.a.        Molecular weight: 71896.83 Da        Isoelectric Point: 4.9180

>NTDB_id=78612 GsuE55_RS09480 WP_172418609.1 1914894..1916762(-) (pepF) [Geobacillus subterraneus strain E55-1]
MENNNSCIDHIVEEDDTVEEKKTKKSLPARSEIPVEETWRLEDIFPTDEAWEQEFHQVKAMIPKLGEYKGRLGESPEVLY
EALQYQDEVSMRLGKLYTYAHMRYDQDTTNSFYQGLDARAKSLYSEASSAMAFIVPEILAIDEATLRAFLEQYEPLRLYA
HALDEITRQRPHVLSAAEEALLAQAAEVMQSASNTFSALNNADLTFPAIIDENGEEVEVTHGRFIRFLESADRRVRRDAF
YAVYQTYEKFQHTFANTLAGAVKKDNFFARVRRYESARQAALDANNIPESVYDNLIATIHEHLPLLHRYVRLRKRALGLD
ELHMYDLYTPLVKEVKMEVTYDEAKQYMLEGLAPLGEEYIAIVKEGLENRWVDVRENRGKRSGAYSSGAYGTHPYILLNW
QDNVNNLFTLVHEFGHSVHSYYTRRTQPYPYAHYSIFVAEVASTCNEALLNDYLLKTIDDDKKRLYLLNHYLEGFRGTVF
RQTMFAEFEHLIHLKEQQGEALTAETLTSLYYDLNQKYFGSDVVVDKEIGLEWARIPHFYYNYYVYQYATGFSAATALSR
QILEEGEPAVKRYIDFLKAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLEEFERLLGS

Nucleotide


Download         Length: 1869 bp        

>NTDB_id=78612 GsuE55_RS09480 WP_172418609.1 1914894..1916762(-) (pepF) [Geobacillus subterraneus strain E55-1]
ATGGAGAATAATAATTCGTGTATCGATCATATTGTGGAGGAGGATGACACGGTGGAGGAAAAAAAGACTAAAAAGTCGCT
GCCGGCGCGCAGTGAGATCCCGGTTGAAGAGACATGGAGGCTAGAAGACATTTTTCCGACCGATGAGGCGTGGGAGCAGG
AGTTCCATCAAGTGAAAGCCATGATCCCGAAGCTCGGGGAGTACAAAGGGCGGCTTGGCGAATCGCCGGAGGTGCTGTAT
GAGGCGCTGCAATATCAAGACGAGGTGTCGATGCGGCTTGGCAAGCTGTATACATACGCCCATATGCGCTATGATCAAGA
CACAACCAACTCTTTTTACCAAGGGCTTGACGCTCGGGCGAAAAGTTTATACAGCGAAGCGTCCAGCGCGATGGCGTTCA
TCGTTCCGGAAATTTTAGCCATCGATGAGGCGACGTTGCGCGCCTTTTTGGAACAGTACGAGCCGCTGCGATTGTATGCT
CATGCCTTGGATGAGATTACCCGCCAACGCCCGCACGTTCTCTCGGCTGCGGAGGAGGCGCTGTTGGCGCAGGCGGCCGA
GGTGATGCAGTCGGCATCCAACACGTTTAGCGCGTTGAATAACGCCGATTTGACCTTTCCGGCCATCATCGATGAAAACG
GTGAGGAAGTGGAAGTCACGCACGGGCGTTTCATCCGCTTTTTGGAAAGCGCGGATCGCCGTGTTCGCCGCGATGCGTTT
TACGCGGTATACCAGACGTACGAAAAATTCCAACACACCTTTGCCAATACGTTAGCCGGCGCGGTGAAAAAGGATAACTT
TTTTGCTCGCGTCCGCCGCTATGAATCCGCCCGGCAGGCCGCGTTGGATGCGAACAACATTCCTGAGAGCGTATATGACA
ACTTGATCGCTACCATCCACGAGCATTTGCCGCTGCTGCATCGCTACGTGCGGCTGCGCAAACGGGCGCTCGGGCTCGAT
GAGCTGCACATGTACGACTTATATACGCCGCTAGTCAAAGAGGTTAAAATGGAAGTGACGTATGACGAAGCGAAGCAGTA
TATGCTGGAAGGGTTGGCGCCGCTCGGGGAGGAATACATCGCCATTGTCAAAGAAGGGCTTGAGAATCGCTGGGTTGATG
TCCGCGAAAACCGAGGAAAGCGGAGCGGGGCCTATTCCTCGGGAGCGTACGGCACACACCCGTACATTTTGCTCAACTGG
CAGGACAACGTCAACAATTTGTTTACGCTCGTTCATGAGTTCGGCCATTCGGTTCACAGCTACTACACACGCCGAACGCA
GCCGTATCCGTACGCCCATTATTCGATTTTTGTCGCTGAAGTGGCGTCGACGTGCAACGAAGCGCTGTTGAATGATTATT
TATTGAAAACGATCGATGATGACAAAAAGCGGCTGTATTTGCTCAACCATTACCTTGAAGGATTCCGCGGCACCGTCTTT
CGGCAGACGATGTTCGCCGAGTTTGAGCATTTGATCCATTTGAAGGAGCAGCAAGGAGAGGCGCTGACGGCAGAGACGCT
GACGTCGCTGTACTATGACTTGAATCAAAAGTACTTCGGCAGCGACGTGGTGGTCGACAAAGAAATCGGTTTGGAATGGG
CGCGCATTCCGCATTTTTATTACAACTACTACGTGTATCAATATGCGACTGGTTTCAGCGCGGCGACGGCGCTTAGCCGG
CAAATTCTTGAAGAGGGCGAACCGGCGGTGAAGCGGTATATCGACTTTTTAAAAGCGGGCAGCTCCGATTATCCGATTGA
AGTGCTGAAAAAAGCCGGTGTCGATATGACGAGCGCCGAGCCGATCCGCCAGGCGTGCCAAGTGTTCGCCGAAAAACTGG
AAGAGTTCGAGCGGCTGCTTGGGAGCTGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(137-206)

Peptidase family M3 (Peptidase_M3)

(228-607)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.269

95.016

0.487

Multiple sequence alignment