Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PSC78_RS04135 Genome accession   NZ_CP117508
Coordinates   812998..814671 (+) Length   557 a.a.
NCBI ID   WP_104681332.1    Uniprot ID   -
Organism   Enterococcus faecalis strain CQJXZ21-077     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 807998..819671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSC78_RS04105 (PSC78_04105) - 808249..809094 (+) 846 WP_002355876.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  PSC78_RS04110 (PSC78_04110) xseA 809104..810450 (+) 1347 WP_002355877.1 exodeoxyribonuclease VII large subunit -
  PSC78_RS04115 (PSC78_04115) - 810452..810682 (+) 231 WP_002355878.1 exodeoxyribonuclease VII small subunit -
  PSC78_RS04120 (PSC78_04120) - 810682..811563 (+) 882 WP_002355879.1 polyprenyl synthetase family protein -
  PSC78_RS04125 (PSC78_04125) - 811577..812392 (+) 816 WP_002355880.1 TlyA family RNA methyltransferase -
  PSC78_RS04130 (PSC78_04130) - 812531..812980 (+) 450 WP_002355883.1 arginine repressor -
  PSC78_RS04135 (PSC78_04135) recN 812998..814671 (+) 1674 WP_104681332.1 DNA repair protein RecN Machinery gene
  PSC78_RS04140 (PSC78_04140) - 814762..814872 (-) 111 WP_002383399.1 DUF4044 domain-containing protein -
  PSC78_RS04145 (PSC78_04145) - 814940..815905 (-) 966 WP_002386196.1 magnesium transporter CorA family protein -
  PSC78_RS04150 (PSC78_04150) - 816150..816542 (+) 393 WP_002383401.1 DUF3397 domain-containing protein -
  PSC78_RS04155 (PSC78_04155) mraZ 816777..817262 (+) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  PSC78_RS04160 (PSC78_04160) rsmH 817277..818233 (+) 957 WP_002355891.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  PSC78_RS04165 (PSC78_04165) ftsL 818250..818657 (+) 408 WP_002355892.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62568.97 Da        Isoelectric Point: 4.5727

>NTDB_id=786101 PSC78_RS04135 WP_104681332.1 812998..814671(+) (recN) [Enterococcus faecalis strain CQJXZ21-077]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKQLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIGMLDEFGGKKLLAVKE
KYTQAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDPEYKSLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=786101 PSC78_RS04135 WP_104681332.1 812998..814671(+) (recN) [Enterococcus faecalis strain CQJXZ21-077]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGTGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGCAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGGATTGTCAACATTACTAATTTAAAAAGAATTGGAGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGGTATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACAGGCGTATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGC
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATCCAGAATATAAATC
ATTGTCAGATACTGTTCAAAATGCCTACTACTTACTACAAGAAGCTAGTGGAGATCTTTCTAGGTTGATTGATGGCTTAG
AACTAGATGAAGGCCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGTGATTCG
ATCGAAACGATTTTATCTTACTATGAAGAAATTACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGCGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAAGCGGCTCATCAACAAGCGTTAGCTTTGCGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTCGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACGGAATTTGAAGTCCGCTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGTTGGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTGGATACAGGAGTCAGTGGCCGGGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCACAAGTGGCAGCCGTTGCTGATGAACATTATTTTATTGA
AAAAGAAATTGTGGCGGGTCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCACGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.691

100

0.501