Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   LLID5_RS02740 Genome accession   NZ_AP025701
Coordinates   539248..539802 (-) Length   184 a.a.
NCBI ID   WP_058204350.1    Uniprot ID   -
Organism   Lactococcus lactis strain ID-5     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 534248..544802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLID5_RS02715 (LLID5_05110) miaA 534280..535164 (+) 885 WP_085624052.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  LLID5_RS02720 (LLID5_05120) - 535247..535915 (+) 669 WP_033899653.1 hypothetical protein -
  LLID5_RS02725 (LLID5_05130) - 536036..536932 (+) 897 WP_003129543.1 SPFH domain-containing protein -
  LLID5_RS02735 (LLID5_05160) - 538650..539237 (-) 588 WP_058204349.1 hypothetical protein -
  LLID5_RS02740 (LLID5_05170) irvR 539248..539802 (-) 555 WP_058204350.1 helix-turn-helix domain-containing protein Regulator
  LLID5_RS02745 (LLID5_05180) - 540354..540524 (-) 171 WP_165379817.1 hypothetical protein -
  LLID5_RS02750 (LLID5_05190) - 540590..540796 (+) 207 WP_058204351.1 helix-turn-helix transcriptional regulator -
  LLID5_RS02755 - 540851..541601 (+) 751 Protein_514 phage antirepressor KilAC domain-containing protein -
  LLID5_RS02760 (LLID5_05230) - 541706..541891 (+) 186 WP_226319369.1 phage replisome organizer N-terminal domain-containing protein -
  LLID5_RS02765 (LLID5_05240) - 541939..542526 (+) 588 WP_251919096.1 DnaD domain protein -
  LLID5_RS02770 - 542734..542826 (+) 93 WP_081043124.1 DUF1660 family phage protein -
  LLID5_RS02775 (LLID5_05250) - 542910..543299 (+) 390 WP_058204354.1 DUF722 domain-containing protein -
  LLID5_RS02780 (LLID5_05260) - 543577..544734 (+) 1158 WP_251919097.1 glycoside hydrolase family protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20952.69 Da        Isoelectric Point: 4.9034

>NTDB_id=78609 LLID5_RS02740 WP_058204350.1 539248..539802(-) (irvR) [Lactococcus lactis strain ID-5]
MGRGKSTPQDEAMRTIVSSNIKKYLDIKKKKAVDLQKNTGISQSSISEYINGKSLPNPGNLQKIADFFGVLREDIDPRHS
EDWEEPEELPDIIQRITDISMQLEEPRQKVVLNTASSQLKEQEKENAKVVSLRTEKQKQGIDLADLVDESKVDWDKWVSF
DGKPLTDEVKEAMKQVLGKQLEDK

Nucleotide


Download         Length: 555 bp        

>NTDB_id=78609 LLID5_RS02740 WP_058204350.1 539248..539802(-) (irvR) [Lactococcus lactis strain ID-5]
ATGGGACGTGGGAAATCAACTCCGCAAGATGAAGCAATGCGAACAATAGTTTCTTCTAATATAAAAAAATATTTAGATAT
AAAAAAGAAGAAAGCAGTTGACTTACAAAAGAATACAGGTATATCTCAAAGCTCAATTAGTGAATATATAAATGGTAAAT
CCCTACCTAATCCTGGTAATCTTCAAAAAATAGCTGATTTCTTCGGTGTTCTTAGAGAGGATATTGACCCTAGACATTCT
GAGGATTGGGAAGAACCTGAAGAATTGCCAGACATTATCCAACGAATAACTGATATATCTATGCAACTTGAAGAACCAAG
ACAAAAAGTCGTTCTTAATACTGCTTCTTCTCAATTGAAAGAGCAAGAAAAGGAAAATGCTAAGGTTGTATCTCTTAGAA
CTGAAAAACAAAAGCAAGGTATTGACCTTGCCGATTTAGTAGATGAAAGTAAAGTTGATTGGGATAAGTGGGTTTCATTT
GATGGTAAGCCATTAACTGATGAAGTTAAGGAAGCTATGAAACAAGTCCTTGGAAAGCAATTAGAAGACAAATAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(21-70)

Lactococcus bacteriophage repressor (Lac_bphage_repr)

(136-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

36.598

100

0.386

Multiple sequence alignment