Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   QAD56_RS01530 Genome accession   NZ_CP130625
Coordinates   294926..295975 (-) Length   349 a.a.
NCBI ID   WP_373931134.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS08     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 289926..300975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD56_RS01510 (QAD56_01515) rpsL 290614..291021 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  QAD56_RS01515 (QAD56_01520) rpsG 291037..291504 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  QAD56_RS01520 (QAD56_01525) fusA 291516..293594 (+) 2079 WP_139542743.1 elongation factor G -
  QAD56_RS01525 (QAD56_01530) - 294408..294731 (+) 324 WP_228839871.1 flagellar protein -
  QAD56_RS01530 (QAD56_01535) waaF 294926..295975 (-) 1050 WP_373931134.1 lipopolysaccharide heptosyltransferase II Regulator
  QAD56_RS01535 (QAD56_01540) hisS 296037..297365 (+) 1329 WP_154470424.1 histidine--tRNA ligase -
  QAD56_RS01540 (QAD56_01545) asd 297352..298392 (+) 1041 WP_373931135.1 aspartate-semialdehyde dehydrogenase -
  QAD56_RS01545 (QAD56_01550) - 298866..299970 (+) 1105 Protein_297 DUF874 family protein -
  QAD56_RS01550 (QAD56_01555) - 300204..300947 (-) 744 WP_373931137.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39627.52 Da        Isoelectric Point: 9.8264

>NTDB_id=786047 QAD56_RS01530 WP_373931134.1 294926..295975(-) (waaF) [Helicobacter pylori strain BS08]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTRKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIISAPKEYHQVEKYCFLFSQFLKKELDRKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAILLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=786047 QAD56_RS01530 WP_373931134.1 294926..295975(-) (waaF) [Helicobacter pylori strain BS08]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAGAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATTTCTGCCCCCAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAGAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGTTATGGGAG
CGCTAAAAGATGGCCGGCTTCTTATTACGCTGAAGTTTCTGCTATTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCTTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAGCAATCGTATTGAACCATCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361