Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   LLID5_RS01990 Genome accession   NZ_AP025701
Coordinates   407868..408584 (-) Length   238 a.a.
NCBI ID   WP_251919052.1    Uniprot ID   -
Organism   Lactococcus lactis strain ID-5     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 402868..413584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLID5_RS01975 (LLID5_03820) cdaA 404560..405438 (+) 879 WP_003131542.1 diadenylate cyclase CdaA -
  LLID5_RS01980 (LLID5_03830) - 405428..406387 (+) 960 WP_012897245.1 CdaR family protein -
  LLID5_RS01985 (LLID5_03840) glmM 406433..407791 (+) 1359 WP_003131539.1 phosphoglucosamine mutase -
  LLID5_RS01990 (LLID5_03850) treR 407868..408584 (-) 717 WP_251919052.1 trehalose operon repressor Regulator
  LLID5_RS01995 (LLID5_03860) - 408695..409180 (+) 486 WP_251919053.1 PTS glucose transporter subunit IIA -
  LLID5_RS02000 (LLID5_03870) - 409317..410882 (+) 1566 WP_025016545.1 PTS transporter subunit EIIC -
  LLID5_RS02005 (LLID5_03880) - 410950..413259 (+) 2310 WP_251919054.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27878.52 Da        Isoelectric Point: 6.4168

>NTDB_id=78604 LLID5_RS01990 WP_251919052.1 407868..408584(-) (treR) [Lactococcus lactis strain ID-5]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSANYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT
SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTY
DYLEDNLGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=78604 LLID5_RS01990 WP_251919052.1 407868..408584(-) (treR) [Lactococcus lactis strain ID-5]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC
AAGTGAAAATGAGCTCTCTGCTAATTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG
GGCTTATTCAAAGACGACATGGCTATGGTAGCATTGTCCTCGCTCACGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT
TCATACAAAGAACTACAAACCTCTATGGGTTTCCATAGTGAAACTGAGGTCATTCGATTTGAAAGACTTGAAATTAACCC
TAAACTTTCAGAAACAACTGGTTTTGCCGTTGGTGAACACGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAAT
TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCGAAGGTTTAACTCCAGAACATGCTAAAATTTCAACCTAT
GACTACTTAGAAGATAATTTAGGGCTTGACATTGCCTATGCTCAAAAGGAAGTCACGATTGATTTTGCCTGCGAAGATGA
CTTTAAATACCTTGACTTAAACCCCAAAGACCATCATGTCGTGTCTGTCAAATCTCATGTTTATCTTGCTGATAATACTC
TTTTTCAGTATACTGAATCTCGACATCAAGTCGACCGCTTTCGTTTCACAGAATTCGCTAGACGACAAAAAAGATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(89-228)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

46.414

99.58

0.462

Multiple sequence alignment