Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   QAP04_RS01615 Genome accession   NZ_CP130623
Coordinates   315876..316925 (-) Length   349 a.a.
NCBI ID   WP_373961510.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS04     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 310876..321925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP04_RS01595 (QAP04_01590) rpsG 311160..311627 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  QAP04_RS01600 (QAP04_01595) fusA 311639..313717 (+) 2079 WP_000101840.1 elongation factor G -
  QAP04_RS01605 (QAP04_01600) - 314260..315247 (-) 988 Protein_309 aldo/keto reductase -
  QAP04_RS01610 (QAP04_01605) - 315382..315684 (+) 303 WP_257535148.1 hypothetical protein -
  QAP04_RS01615 (QAP04_01610) waaF 315876..316925 (-) 1050 WP_373961510.1 lipopolysaccharide heptosyltransferase II Regulator
  QAP04_RS01620 (QAP04_01615) hisS 316987..318315 (+) 1329 WP_373961511.1 histidine--tRNA ligase -
  QAP04_RS01625 (QAP04_01620) asd 318302..319342 (+) 1041 WP_373961512.1 aspartate-semialdehyde dehydrogenase -
  QAP04_RS01630 (QAP04_01625) - 319774..320979 (+) 1206 WP_373961513.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39339.86 Da        Isoelectric Point: 8.9299

>NTDB_id=786005 QAP04_RS01615 WP_373961510.1 315876..316925(-) (waaF) [Helicobacter pylori strain BS04]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLSFN
NAYNLCGKTSIEELIERIAVLDLFITNDSGPMHVAASAQTPLIALFGPTDEKETSPYKAQKAIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLEAAHTLLEEG

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=786005 QAP04_RS01615 WP_373961510.1 315876..316925(-) (waaF) [Helicobacter pylori strain BS04]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCAATCACTTTAAACAACCATTTCTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCCTTATCATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTAGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTGCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAGA
AGAGGGTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.506

99.713

0.384