Detailed information NTG0785985

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: QY054_RS10720
• Genome accession: NZ_CP130602
• Coordinates: 2145111..2146343 (-)
• Length: 410 a.a.
• NCBI ID: WP_011378299.1
• Uniprot ID: Q31LH0
• Organism: Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2140111..2151343

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QY054_RS10695 (QY054_10695)	pheS	2140805..2141806 (+)	1002	WP_011244339.1	phenylalanine--tRNA ligase subunit alpha	-
QY054_RS10700 (QY054_10700)	-	2141930..2142184 (-)	255	WP_011378297.1	helix-hairpin-helix domain-containing protein	-
QY054_RS10705 (QY054_10705)	dusA	2142281..2143312 (-)	1032	WP_011244337.1	tRNA dihydrouridine(20/20a) synthase DusA	-
QY054_RS10710 (QY054_10710)	-	2143339..2144586 (+)	1248	WP_011378298.1	NAD(P)/FAD-dependent oxidoreductase	-
QY054_RS10715 (QY054_10715)	-	2144551..2145105 (-)	555	WP_011244335.1	hypothetical protein	-
QY054_RS10720 (QY054_10720)	pilC	2145111..2146343 (-)	1233	WP_011378299.1	type II secretion system F family protein	Machinery gene
QY054_RS10725 (QY054_10725)	pilT	2146368..2147456 (-)	1089	WP_011378300.1	type IV pilus twitching motility protein PilT	Machinery gene
QY054_RS10730 (QY054_10730)	pilB/pilB1	2147527..2149527 (-)	2001	WP_011378301.1	GspE/PulE family protein	Machinery gene
QY054_RS10735 (QY054_10735)	grpE	2149804..2150427 (+)	624	WP_011378302.1	nucleotide exchange factor GrpE	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 45123.05 Da
• Isoelectric Point: 9.1701

>NTDB_id=785985 QY054_RS10720 WP_011378299.1 2145111..2146343(-) (pilC) [Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434]
MPTYVAQVRDSRGALRKQRIQAGNVREARVGLRQQGFLVQSIDESAGLSLGGLSSFNLEEATSKVTVKDMALFSRQLSSL
VDAGVPIVRALGLLTEQTRNPKLRKTLKQINIDVQEGLNLSDSMRKFPKVFDGLYVAMIQAGETGGVLDDVLNRLSKLLE
DMSRLRNQMKSAMTYPMAVFVIAILVFLGMTIFIIPTFAGIFEDQGAELPGFTLLLLSISQLLRTPIFWGFFLIFLFGSI
FVFKQYYSTPPGRLSVDNLVLRLPVLGEMIQKAATARFCRTFGSLTRAGVPIMTALEIVRDTAGNQAIARSIDAARMEVQ
TGGMMSVALSRYRVFPLMALSMITIGEETGELDTMVNKVADFYEDEVEQAVKGLTSLLEPIMIVLVGGIVGSILLAMYLP
MFSIFDQIKG

Nucleotide

• Length: 1233 bp

>NTDB_id=785985 QY054_RS10720 WP_011378299.1 2145111..2146343(-) (pilC) [Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434]
ATGCCGACATATGTTGCTCAGGTTCGTGATAGCCGAGGAGCTCTTCGCAAGCAGCGCATCCAAGCAGGAAATGTTCGTGA
AGCGCGGGTTGGATTGCGCCAGCAAGGGTTTTTGGTTCAGTCAATCGATGAGTCTGCTGGATTGTCTCTGGGCGGGTTAA
GTAGTTTTAATCTCGAAGAAGCGACGAGTAAGGTCACTGTCAAAGACATGGCCCTTTTCTCGCGGCAGCTTTCATCCTTG
GTCGATGCGGGGGTTCCAATTGTTAGAGCCCTAGGATTGCTGACTGAACAGACACGTAATCCCAAGCTTCGTAAAACCCT
GAAGCAGATTAATATCGATGTGCAAGAGGGCTTAAATCTCTCGGACTCGATGCGTAAGTTCCCGAAAGTTTTCGATGGTC
TCTACGTAGCGATGATTCAAGCTGGAGAGACAGGTGGCGTCTTAGATGACGTCCTCAACCGGCTTTCCAAACTACTGGAA
GATATGTCGAGATTGCGCAACCAGATGAAGTCTGCAATGACTTATCCGATGGCAGTCTTTGTGATTGCAATTCTTGTGTT
TTTAGGGATGACTATTTTTATCATCCCAACCTTTGCAGGAATTTTTGAAGACCAAGGAGCGGAGTTGCCTGGCTTCACAT
TGCTGTTGCTGTCAATTAGCCAGCTATTGAGAACACCGATCTTTTGGGGCTTCTTCCTGATCTTTCTATTTGGATCAATC
TTTGTCTTTAAACAATACTATTCAACTCCACCTGGCCGCCTCAGTGTAGACAACCTAGTGCTACGCCTGCCAGTTTTGGG
AGAGATGATTCAGAAGGCTGCCACAGCTCGCTTCTGCCGAACCTTTGGTTCACTCACAAGGGCAGGGGTGCCGATTATGA
CTGCTCTTGAAATCGTGCGAGATACCGCAGGGAATCAGGCGATCGCTCGCTCAATCGATGCAGCCCGGATGGAAGTACAG
ACTGGCGGCATGATGAGTGTGGCACTGTCGAGATATCGGGTCTTCCCCTTGATGGCTCTCAGCATGATTACGATTGGGGA
AGAGACGGGTGAACTTGACACCATGGTAAACAAAGTGGCTGACTTCTATGAAGATGAAGTCGAGCAAGCGGTCAAGGGTT
TGACCAGTTTGCTAGAGCCGATCATGATTGTGCTGGTAGGCGGTATTGTCGGCTCGATTTTGCTGGCGATGTATCTGCCA
ATGTTCAGCATTTTCGACCAGATTAAGGGGTAA

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (278-400)

• Type II secretion system (T2SS), protein F (T2SSF) (73-196)

3D structure

• AlphaFold DB: Q31LH0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	42.469	98.78	0.42