Detailed information NTG0785980

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QY054_RS08085
• Genome accession: NZ_CP130602
• Coordinates: 1613466..1614398 (-)
• Length: 310 a.a.
• NCBI ID: WP_011378081.1
• Uniprot ID: Q31MY2
• Organism: Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1608466..1619398

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QY054_RS08060 (QY054_08060)	ilvC	1609375..1610367 (-)	993	WP_039755692.1	ketol-acid reductoisomerase	-
QY054_RS08065 (QY054_08065)	-	1610393..1611259 (+)	867	WP_303261663.1	PHP domain-containing protein	-
QY054_RS08070 (QY054_08070)	clpP	1611262..1611942 (-)	681	WP_265575068.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
QY054_RS08075 (QY054_08075)	psb29	1611986..1612750 (+)	765	WP_039755956.1	photosystem II biogenesis protein Psp29	-
QY054_RS08080 (QY054_08080)	-	1612872..1613450 (+)	579	WP_011378080.1	hypothetical protein	-
QY054_RS08085 (QY054_08085)	rpoS	1613466..1614398 (-)	933	WP_011378081.1	RpoD/SigA family RNA polymerase sigma factor	Regulator
QY054_RS08090 (QY054_08090)	-	1614603..1614788 (+)	186	WP_039755693.1	hypothetical protein	-
QY054_RS08095 (QY054_08095)	-	1615206..1616273 (+)	1068	WP_011378082.1	hypothetical protein	-
QY054_RS08100 (QY054_08100)	-	1616286..1616960 (+)	675	WP_011242330.1	acyltransferase	-
QY054_RS08105 (QY054_08105)	-	1617136..1617294 (+)	159	WP_011242331.1	hypothetical protein	-
QY054_RS08110 (QY054_08110)	-	1617276..1617578 (+)	303	WP_126147952.1	hypothetical protein	-
QY054_RS08115 (QY054_08115)	-	1617976..1618137 (-)	162	WP_155813833.1	hypothetical protein	-
QY054_RS08120 (QY054_08120)	-	1618183..1618878 (-)	696	WP_155813835.1	hypothetical protein	-

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 35282.51 Da
• Isoelectric Point: 9.6197

>NTDB_id=785980 QY054_RS08085 WP_011378081.1 1613466..1614398(-) (rpoS) [Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434]
MASASAHAVATAQRRTRDNVSWYLSSIGRIPLLTADQEIELGQKVQVMMNLLEETSSDRTFTEAETAAIQLGQRAKERMI
KANLRLVVSVAKKYQGKGLEFLDLIQEGALGLERAVEKFDPSKGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLTERL
SQIRKVTRELAHELGRLPSRQEIAEAVQLPLNDLETILRQSRQCTSLDAPVSGEDGKSFLGELIADPNGNEPMDIMENAM
QREQLDAWLEHLTPQERQVLYLRFGLGDGERHTLAEIGRMMEVSRERVRQVEVKALRKLRNLTKRSRIAV

Nucleotide

• Length: 933 bp

>NTDB_id=785980 QY054_RS08085 WP_011378081.1 1613466..1614398(-) (rpoS) [Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434]
ATGGCGAGTGCTTCGGCTCATGCTGTCGCGACGGCTCAGCGACGAACAAGAGATAACGTCAGTTGGTATCTCAGCTCCAT
CGGTCGGATTCCATTGCTCACCGCCGATCAGGAGATCGAGCTGGGGCAGAAAGTGCAGGTGATGATGAACCTGCTGGAAG
AAACTTCTAGCGATCGCACGTTTACTGAGGCCGAAACCGCAGCGATCCAGCTGGGGCAGCGTGCTAAGGAACGGATGATC
AAGGCCAACTTGCGTCTTGTGGTCTCTGTGGCCAAAAAGTACCAAGGTAAGGGTCTTGAGTTTCTTGACCTGATCCAAGA
AGGCGCTCTCGGGCTAGAACGTGCTGTCGAGAAATTTGACCCCTCCAAGGGCTACAAGTTTTCCACCTATGCCTTTTGGT
GGATTCGCCAGAGCATGACAAGGGCGATCGCCTGCCAATCGCGCACTATTCGCCTGCCGGTTCACTTGACTGAACGGCTG
AGCCAAATCCGCAAAGTGACTCGGGAACTGGCGCACGAGCTAGGCCGTTTGCCCTCTCGCCAAGAAATTGCAGAAGCGGT
TCAGTTGCCACTGAATGACCTCGAAACAATTCTGCGTCAGTCGCGCCAATGCACCAGCCTAGATGCTCCAGTCAGTGGTG
AAGATGGCAAGAGTTTCCTGGGTGAGCTGATTGCTGATCCCAACGGCAATGAGCCCATGGACATCATGGAAAATGCCATG
CAGCGCGAGCAGCTTGATGCTTGGCTCGAGCATCTCACGCCCCAAGAGCGCCAGGTGCTCTATCTCCGCTTTGGACTGGG
TGATGGCGAACGTCATACCCTCGCTGAAATCGGCCGGATGATGGAAGTCTCGCGCGAGCGGGTCCGCCAAGTTGAGGTCA
AAGCGCTGCGTAAGCTCCGCAACCTGACGAAGCGATCGCGGATTGCTGTCTAG

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (248-301)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (18-48)

• Sigma-70 region 3 (Sigma70_r3) (158-234)

• Sigma-70 region 2 (Sigma70_r2) (79-148)

3D structure

• AlphaFold DB: Q31MY2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	39.535	97.097	0.384