Detailed information NTG0785976

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: PSQ91_RS08120
• Genome accession: NZ_CP117486
• Coordinates: 1625086..1626456 (-)
• Length: 456 a.a.
• NCBI ID: WP_065124638.1
• Uniprot ID: -
• Organism: Pediococcus acidilactici strain SRCM102024
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1620086..1631456

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSQ91_RS08100 (PSQ91_08100)	-	1620228..1620641 (-)	414	WP_004165556.1	Mini-ribonuclease 3	-
PSQ91_RS08105 (PSQ91_08105)	cysS	1620634..1622052 (-)	1419	WP_065124641.1	cysteine--tRNA ligase	-
PSQ91_RS08110 (PSQ91_08110)	gltX	1622209..1623696 (-)	1488	WP_065124640.1	glutamate--tRNA ligase	-
PSQ91_RS08115 (PSQ91_08115)	-	1623822..1624970 (-)	1149	WP_065124639.1	PIN/TRAM domain-containing protein	-
PSQ91_RS08120 (PSQ91_08120)	radA	1625086..1626456 (-)	1371	WP_065124638.1	DNA repair protein RadA	Machinery gene
PSQ91_RS08125 (PSQ91_08125)	-	1626550..1627086 (-)	537	WP_024862955.1	dUTP diphosphatase	-
PSQ91_RS08130 (PSQ91_08130)	-	1627215..1627481 (+)	267	WP_232457134.1	GNAT family N-acetyltransferase	-
PSQ91_RS08135 (PSQ91_08135)	rpiA	1627548..1628234 (+)	687	WP_002832365.1	ribose-5-phosphate isomerase RpiA	-
PSQ91_RS08140 (PSQ91_08140)	-	1628283..1629629 (+)	1347	WP_002832366.1	aminopeptidase C	-
PSQ91_RS08145 (PSQ91_08145)	-	1629975..1630646 (-)	672	WP_065124637.1	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	-
PSQ91_RS08150 (PSQ91_08150)	accA	1630670..1631437 (-)	768	WP_024862951.1	carboxyltransferase subunit alpha	-

Sequence

Protein

• Length: 456 a.a.
• Molecular weight: 50296.80 Da
• Isoelectric Point: 7.1016

>NTDB_id=785976 PSQ91_RS08120 WP_065124638.1 1625086..1626456(-) (radA) [Pediococcus acidilactici strain SRCM102024]
MAKVKTQFVCNNCGYASPKFLGRCPNCGKWNTLVEERMSDPKDERKSRVSFDGKHTQPQLISDVAMHEEPRVKTGMEELN
RVLGGGVVDGSLVLIGGDPGIGKSTLLLQLSGQLAETQRKVLYVSGEESASQIKMRAERLKVNSERFYLYPETDMSSVRA
VIEELHPEYVIIDSVQTMQEPDIESAVGSVSQIREITAELMQIAKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMREEGLREVANPSEIFLEERLKDASGSAIVVSMEGTRPILVEIQALITPTIFG
NAQRTASGLDRNRVSLIMAVLEKRAKLTLQNQDAYLKAAGGVKLDEPAIDLALAISIVSSFKNQGTRPTDSFVGEIGLTG
EIRRVNRIEQRVAEAQKLGFKRILIPKNNLKGWQPPEGIEVVGVATIADAIRRAFN

Nucleotide

• Length: 1371 bp

>NTDB_id=785976 PSQ91_RS08120 WP_065124638.1 1625086..1626456(-) (radA) [Pediococcus acidilactici strain SRCM102024]
ATGGCAAAAGTTAAGACCCAGTTTGTATGCAATAATTGCGGATACGCCTCCCCTAAATTTTTAGGACGCTGTCCCAATTG
TGGTAAGTGGAACACTTTAGTTGAAGAACGGATGAGCGATCCAAAGGATGAACGAAAAAGTCGGGTGAGCTTTGACGGCA
AACATACGCAACCACAGCTGATTTCGGACGTCGCGATGCACGAGGAACCCCGGGTAAAAACCGGGATGGAAGAACTTAAC
CGCGTGCTTGGTGGCGGGGTGGTTGACGGCTCCCTAGTCTTAATTGGTGGGGATCCTGGAATCGGAAAATCAACCCTGTT
GTTACAGCTATCAGGACAGTTGGCAGAGACGCAACGCAAGGTACTTTACGTTTCTGGTGAAGAAAGTGCTTCCCAGATTA
AGATGCGTGCCGAACGATTGAAAGTCAATAGTGAACGCTTCTATTTGTATCCAGAGACCGATATGTCTAGCGTGCGGGCG
GTGATTGAGGAGTTACACCCCGAATACGTGATCATTGATTCGGTTCAGACCATGCAGGAACCGGATATTGAATCGGCGGT
GGGGAGCGTTTCTCAAATTCGAGAAATTACCGCAGAATTAATGCAAATCGCGAAAACCAATAACATTACCATCTTCATCG
TTGGTCACGTGACCAAGGGCGGCGCAATTGCGGGGCCGAAGATTTTGGAACACATGGTGGATACGGTGCTTTACTTTGAA
GGTGATCTGCACCACACTTACCGGATCCTGCGAGCGGTGAAGAACCGGTTTGGTTCCACGAACGAATTAGGAATCTTTGA
GATGCGCGAAGAAGGGTTACGCGAGGTGGCTAACCCGTCAGAAATTTTCTTAGAAGAGCGTTTAAAAGATGCTTCGGGAT
CGGCAATTGTAGTTTCAATGGAAGGAACTCGGCCGATTTTAGTTGAAATACAAGCCTTGATTACGCCCACCATCTTCGGC
AATGCGCAGCGCACGGCGAGCGGGTTGGACCGCAACCGGGTTTCGCTGATCATGGCGGTGCTCGAAAAACGGGCAAAGCT
TACTTTGCAAAACCAAGACGCCTATTTAAAGGCGGCGGGCGGCGTTAAGCTTGACGAACCCGCAATTGACTTAGCGTTGG
CGATTAGTATTGTTTCAAGTTTTAAAAATCAGGGAACCCGGCCGACCGATAGTTTTGTTGGTGAAATCGGCTTAACTGGT
GAAATTCGGCGGGTTAACCGAATTGAACAACGGGTCGCTGAAGCACAAAAGCTTGGTTTTAAGCGGATTTTGATTCCGAA
GAATAATTTGAAGGGGTGGCAGCCCCCCGAAGGAATTGAAGTTGTAGGGGTAGCTACGATTGCCGACGCGATTCGGCGGG
CATTTAATTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (72-221)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (362-429)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus mitis SK321	67.033	99.781	0.669
radA	Streptococcus mitis NCTC 12261	66.813	99.781	0.667
radA	Streptococcus pneumoniae Rx1	66.813	99.781	0.667
radA	Streptococcus pneumoniae TIGR4	66.813	99.781	0.667
radA	Streptococcus pneumoniae D39	66.813	99.781	0.667
radA	Streptococcus pneumoniae R6	66.813	99.781	0.667
radA	Bacillus subtilis subsp. subtilis str. 168	65.132	100	0.651