Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LLID5_RS00210 Genome accession   NZ_AP025701
Coordinates   39834..40589 (+) Length   251 a.a.
NCBI ID   WP_003132217.1    Uniprot ID   Q9CJD9
Organism   Lactococcus lactis strain ID-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 34834..45589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLID5_RS00180 (LLID5_00280) - 34891..35340 (+) 450 WP_058204254.1 GNAT family N-acetyltransferase -
  LLID5_RS00185 (LLID5_00290) - 35417..35659 (+) 243 WP_012896919.1 TM2 domain-containing protein -
  LLID5_RS00190 (LLID5_00300) - 35742..37364 (-) 1623 WP_058222955.1 SulP family inorganic anion transporter -
  LLID5_RS00195 (LLID5_00310) - 37574..38095 (+) 522 WP_033900573.1 N-acetyltransferase -
  LLID5_RS00205 (LLID5_00320) - 38560..39735 (+) 1176 WP_251918915.1 pyridoxal phosphate-dependent aminotransferase -
  LLID5_RS00210 (LLID5_00330) recO 39834..40589 (+) 756 WP_003132217.1 DNA repair protein RecO Machinery gene
  LLID5_RS00215 (LLID5_00340) - 40703..41584 (+) 882 WP_251918916.1 Rgg/GadR/MutR family transcriptional regulator -
  LLID5_RS00220 (LLID5_00350) - 41813..43093 (+) 1281 WP_242508898.1 radical SAM protein -
  LLID5_RS00225 (LLID5_00360) - 43097..44659 (+) 1563 WP_058204248.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28703.89 Da        Isoelectric Point: 5.9537

>NTDB_id=78589 LLID5_RS00210 WP_003132217.1 39834..40589(+) (recO) [Lactococcus lactis strain ID-5]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=78589 LLID5_RS00210 WP_003132217.1 39834..40589(+) (recO) [Lactococcus lactis strain ID-5]
ATGCGTGATGCCGAAACTCAAGGTCTAGTACTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCCCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTTAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAATA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGA
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CJD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.472

98.008

0.534

Multiple sequence alignment