Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PSH68_RS24045 Genome accession   NZ_CP117464
Coordinates   5283072..5284439 (-) Length   455 a.a.
NCBI ID   WP_034107134.1    Uniprot ID   A0A855QI93
Organism   Pseudomonas lurida strain FP1465     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5278072..5289439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH68_RS24025 (PSH68_24015) yjiA 5279070..5280029 (-) 960 WP_305434253.1 GTPase -
  PSH68_RS24030 (PSH68_24020) - 5280186..5280383 (-) 198 WP_003194308.1 YbdD/YjiX family protein -
  PSH68_RS24035 (PSH68_24025) - 5280399..5282465 (-) 2067 WP_034107129.1 carbon starvation CstA family protein -
  PSH68_RS24040 (PSH68_24030) - 5282640..5283008 (+) 369 WP_034107132.1 PilZ domain-containing protein -
  PSH68_RS24045 (PSH68_24035) radA 5283072..5284439 (-) 1368 WP_034107134.1 DNA repair protein RadA Machinery gene
  PSH68_RS24050 (PSH68_24040) - 5284475..5285023 (-) 549 WP_034107136.1 ankyrin repeat domain-containing protein -
  PSH68_RS24055 (PSH68_24045) katB 5285089..5286630 (-) 1542 WP_186762084.1 catalase KatB -
  PSH68_RS24060 (PSH68_24050) mscL 5286917..5287336 (+) 420 WP_034107141.1 large-conductance mechanosensitive channel protein MscL -
  PSH68_RS24065 (PSH68_24055) - 5287381..5288157 (-) 777 WP_034107143.1 ferredoxin--NADP reductase -
  PSH68_RS24070 (PSH68_24060) - 5288537..5289247 (+) 711 WP_305434255.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48801.31 Da        Isoelectric Point: 7.1317

>NTDB_id=785811 PSH68_RS24045 WP_034107134.1 5283072..5284439(-) (radA) [Pseudomonas lurida strain FP1465]
MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGIRIIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=785811 PSH68_RS24045 WP_034107134.1 5283072..5284439(-) (radA) [Pseudomonas lurida strain FP1465]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCTGGCCAGTGCACCGAGTG
CGGCGCATGGAACACCCTGACTGAAACCATGATCGAGAGTGGCGGTGCTGCGGCCCCCACCGGGCGTGCCGGTTGGACGG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAAATCCCGCGCTTTTCCACAGCCTCCGGCGAGTTG
GACCGCGTGCTGGGCGGCGGCTTGGTGGACGGCTCGGTCGTCCTGATCGGTGGCGACCCCGGTATCGGCAAGTCGACCAT
CCTGTTGCAGACCCTCTGTAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACCGGTGAAGAGTCCCAGCAACAAGTCG
CCATGCGCGCCCGTCGCCTGGGTTTGCCCCAGGACCAGTTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATTGCC
ACGGCCCGTATCGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAATTGCAGTCCGCGCC
GGGCGGTGTCTCCCAAGTGCGCGAGAGTGCGGCGCTGCTGGTGCGTTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCATGTGACCAAAGAAGGCGCGCTGGCCGGGCCACGGGTGCTGGAGCACATGGTCGACACCGTGCTGTATTTCGAG
GGTGAGTCCGACGGACGCCTGCGCCTGCTACGGGCGGTGAAGAACCGCTTCGGCGCCGTGAACGAGTTGGGTGTGTTCGC
CATGACTGACCGCGGGTTGAAAGAAGTCTCCAACCCATCGGCGATCTTTCTGACCCGCGCCCAGGAGGAAGTCCCGGGCA
GTGTCGTGATGGCAACGTGGGAAGGCACCCGGCCGATGCTGGTGGAGGTGCAGGCATTGGTGGATGACAGCCATTTGGCC
AACCCGCGCCGCGTGACCCTGGGCCTGGATCAGAACCGCCTGGCGATGCTGCTGGCGGTATTGCACCGTCACGGCGGCAT
CCCGACCCACGACCAGGACGTGTTTCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAGACCGCGTCCGACCTGGCGTTGA
TGGCTGCGGTGATGTCGAGCCTGCGTAACCGGCCGCTGCCCCATGATCTGCTGGTGTTCGGTGAAGTCGGCTTGTCGGGT
GAAGTCCGCCCGGTGCCCAGTGGCCAGGAGCGCCTGAAGGAAGCGGCCAAGCATGGTTTCAAGCGGGCGATCGTGCCTAA
GGGCAATGCGCCCAAGGAATCGCCGCCGGGCATTCGGATCATTGGGGTGACGCGCCTGGAACAGGCCCTGGATGCACTCT
TCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A855QI93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468
  radA Streptococcus pneumoniae Rx1

46.711

100

0.468
  radA Streptococcus pneumoniae D39

46.711

100

0.468
  radA Streptococcus pneumoniae R6

46.711

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.711

100

0.468