NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	PSH82_RS24170	Genome accession	NZ_CP117463
Coordinates	5258040..5259407 (-)	Length	455 a.a.
NCBI ID	WP_038453821.1	Uniprot ID	A0A1N7U1M4
Organism	Pseudomonas simiae strain FP1649
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 5253040..5264407

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH82_RS24150 (PSH82_24145)	yjiA	5254072..5255031 (-)	960	WP_010206678.1	GTPase	-
PSH82_RS24155 (PSH82_24150)	-	5255188..5255385 (-)	198	WP_003194308.1	YbdD/YjiX family protein	-
PSH82_RS24160 (PSH82_24155)	-	5255401..5257467 (-)	2067	WP_069673142.1	carbon starvation CstA family protein	-
PSH82_RS24165 (PSH82_24160)	-	5257642..5258010 (+)	369	WP_010206681.1	PilZ domain-containing protein	-
PSH82_RS24170 (PSH82_24165)	radA	5258040..5259407 (-)	1368	WP_038453821.1	DNA repair protein RadA	Machinery gene
PSH82_RS24175 (PSH82_24170)	-	5259443..5259982 (-)	540	WP_010206683.1	ankyrin repeat domain-containing protein	-
PSH82_RS24180 (PSH82_24175)	katB	5260041..5261570 (-)	1530	WP_305378422.1	catalase KatB	-
PSH82_RS24185 (PSH82_24180)	mscL	5261870..5262289 (+)	420	WP_010206685.1	large-conductance mechanosensitive channel protein MscL	-
PSH82_RS24190 (PSH82_24185)	-	5262335..5263111 (-)	777	WP_010206686.1	ferredoxin--NADP reductase	-
PSH82_RS24195 (PSH82_24190)	-	5263478..5264188 (+)	711	WP_021492936.1	LuxR family transcriptional regulator	-

Sequence

Protein

Download Length: 455 a.a. Molecular weight: 48746.23 Da Isoelectric Point: 6.8987

                                >NTDB_id=785786 PSH82_RS24170 WP_038453821.1 5258040..5259407(-) (radA) [Pseudomonas simiae strain FP1649]

MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL

DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA

TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE

GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA

NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG

EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGITIIGVTRLEQALDALFE

Nucleotide

Download Length: 1368 bp

                                >NTDB_id=785786 PSH82_RS24170 WP_038453821.1 5258040..5259407(-) (radA) [Pseudomonas simiae strain FP1649]

ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAATGTACCGAATG

CGGTGCGTGGAACACCCTGACTGAAACCATGATCGAGAGCGGTGGCGCTGCGGCCCCCACTGGCCGTGCCGGCTGGACCG

GGCAACAGGCGCAGATCAAGACGTTGGCCGAAGTCAGTGTCGAAGAGATCCCGCGTTTCTCCACGGCCTCCGGTGAATTG

GACCGGGTGCTGGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATTGGTGGCGATCCGGGCATCGGCAAATCGACGAT

CCTGCTACAAACCTTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTATGTCACCGGCGAAGAGTCCCAGCAGCAAGTGG

CCATGCGCGCCCGTCGCCTGGGCTTGCCCCAGGATCAGTTGCGAGTGATGACCGAGACCTGCATTGAAAGCATCATTGCC

ACGGCGCGTATCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAACAACTGCAGTCGGCGCC

GGGGGGGGTGTCCCAGGTGCGTGAGAGTGCGGCGCTGCTGGTGCGCTATGCCAAGCAGAGCGGAACAGCGATCTTCCTGG

TGGGGCATGTGACCAAAGAGGGCGCACTGGCCGGGCCACGGGTGTTGGAGCACATGGTAGACACCGTGCTGTATTTCGAA

GGTGAGTCCGACGGTCGTCTGCGCTTGCTGCGGGCGGTGAAGAACCGTTTCGGCGCGGTCAACGAATTGGGCGTGTTCGC

CATGACTGACCGGGGGCTGAAAGAAGTCTCCAACCCTTCAGCGATTTTTCTCACGCGCGCCCAAGAAGAAGTCCCAGGCA

GTGTGGTGATGGCAACCTGGGAAGGCACCCGTCCGATGCTGGTGGAAGTGCAGGCCCTGGTGGATGACAGTCACTTGGCC

AACCCCCGCCGCGTGACGTTGGGCCTGGATCAGAACCGCCTGGCGATGCTGTTGGCGGTATTGCATCGCCACGGTGGCAT

CCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACGGCATCCGACCTGGCGTTGA

TGGCGGCGGTGATGTCCAGCCTGCGTAACCGGCCGTTGCCCCATGACTTGCTGGTGTTTGGTGAAGTCGGTTTGTCCGGT

GAAGTGCGCCCGGTGCCCAGCGGCCAGGAGCGCCTCAAGGAAGCGGCCAAGCACGGCTTCAAGCGCGCCATCGTGCCCAA

GGGCAATGCGCCGAAGGAATCACCGCCGGGGATCACAATTATTGGCGTGACGCGGTTGGAACAGGCGTTGGATGCGTTGT

TCGAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A1N7U1M4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.672	100	0.499
radA	Streptococcus mitis SK321	46.93	100	0.47
radA	Streptococcus mitis NCTC 12261	46.711	100	0.468
radA	Streptococcus pneumoniae Rx1	46.711	100	0.468
radA	Streptococcus pneumoniae D39	46.711	100	0.468
radA	Streptococcus pneumoniae R6	46.711	100	0.468
radA	Streptococcus pneumoniae TIGR4	46.711	100	0.468

Detailed information NTG0785786