Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH82_RS16400 Genome accession   NZ_CP117463
Coordinates   3593848..3594483 (-) Length   211 a.a.
NCBI ID   WP_010209649.1    Uniprot ID   A0A1N7UJE1
Organism   Pseudomonas simiae strain FP1649     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3588848..3599483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH82_RS16365 (PSH82_16360) - 3589228..3589899 (+) 672 WP_187517255.1 Bax inhibitor-1/YccA family protein -
  PSH82_RS16370 (PSH82_16365) murB 3589962..3590981 (-) 1020 WP_010209654.1 UDP-N-acetylmuramate dehydrogenase -
  PSH82_RS16375 (PSH82_16370) - 3590978..3591442 (-) 465 WP_010209653.1 low molecular weight protein-tyrosine-phosphatase -
  PSH82_RS16380 (PSH82_16375) kdsB 3591442..3592206 (-) 765 WP_010209652.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH82_RS16385 (PSH82_16380) - 3592203..3592388 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH82_RS16390 (PSH82_16385) lpxK 3592413..3593423 (-) 1011 WP_045791941.1 tetraacyldisaccharide 4'-kinase -
  PSH82_RS16395 (PSH82_16390) - 3593423..3593851 (-) 429 WP_010209650.1 biopolymer transporter ExbD -
  PSH82_RS16400 (PSH82_16395) exbB 3593848..3594483 (-) 636 WP_010209649.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH82_RS16405 (PSH82_16400) comA 3594557..3596782 (-) 2226 WP_241912209.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH82_RS16410 (PSH82_16405) - 3596918..3597433 (+) 516 WP_021492748.1 DUF2062 domain-containing protein -
  PSH82_RS16415 (PSH82_16410) - 3597430..3598800 (-) 1371 WP_010209646.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22843.03 Da        Isoelectric Point: 7.3615

>NTDB_id=785779 PSH82_RS16400 WP_010209649.1 3593848..3594483(-) (exbB) [Pseudomonas simiae strain FP1649]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGAGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=785779 PSH82_RS16400 WP_010209649.1 3593848..3594483(-) (exbB) [Pseudomonas simiae strain FP1649]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGCTCTATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGCGTGACCCCCGAGCATCTGCTGGGGCAGGTCTGGGGTTGGATCAAGAACA
AGCAACTGGACAAGGAAAAGCTCAAGGAACTGCGCGCCAACTCCCCGTTGGGTGAAATCCTTGCTGCAGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCCCGCGTCATTCATGAGCTTGAGCGTTATAT
CAATGCTCTCGGCACCATCGCCGCGATGGCGCCGTTGCTCGGCTTGCTCGGCACAGTGCTGGGCATGATCGATATTTTCA
GCTCATTCATGGGCGCCGGCATGACCACCAACGCGGCCGTACTGGCCGGCGGTATCTCCAAAGCGCTGATCACCACAGCC
GCAGGCTTGATGGTGGGTATTCCTTCGGTGTTCTTCCACCGATTCCTGCAACGTCGCATTGATGAGCTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAAGGCGACCGTGACGTCGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1N7UJE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844