Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   PSH69_RS11520 Genome accession   NZ_CP117461
Coordinates   2543281..2543418 (+) Length   45 a.a.
NCBI ID   WP_305412069.1    Uniprot ID   -
Organism   Pseudomonas sp. FP1740     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2538281..2548418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH69_RS11485 (PSH69_11480) - 2538332..2538706 (+) 375 WP_305412062.1 SMI1/KNR4 family protein -
  PSH69_RS11490 (PSH69_11485) - 2538708..2538881 (+) 174 WP_172901200.1 hypothetical protein -
  PSH69_RS11495 (PSH69_11490) - 2539008..2539499 (+) 492 WP_305412063.1 SMI1/KNR4 family protein -
  PSH69_RS11500 (PSH69_11495) - 2539483..2539794 (+) 312 WP_305412064.1 colicin -
  PSH69_RS11505 (PSH69_11500) - 2540076..2540537 (+) 462 WP_305412066.1 SMI1/KNR4 family protein -
  PSH69_RS30245 - 2540694..2540810 (+) 117 WP_370695257.1 HNH endonuclease -
  PSH69_RS11510 (PSH69_11505) - 2540813..2541184 (+) 372 WP_305412067.1 hypothetical protein -
  PSH69_RS11515 (PSH69_11510) - 2541807..2542340 (+) 534 WP_305412068.1 hypothetical protein -
  PSH69_RS11520 (PSH69_11515) nucA/comI 2543281..2543418 (+) 138 WP_305412069.1 hypothetical protein Machinery gene
  PSH69_RS11525 (PSH69_11520) comJ 2543418..2543891 (+) 474 WP_305412071.1 competence protein ComJ -
  PSH69_RS11530 (PSH69_11525) - 2544503..2544862 (+) 360 WP_305412072.1 DUF6124 family protein -
  PSH69_RS11535 (PSH69_11530) ppnN 2545134..2546507 (-) 1374 WP_096480647.1 nucleotide 5'-monophosphate nucleosidase PpnN -
  PSH69_RS11540 (PSH69_11535) - 2546736..2547263 (+) 528 WP_305412074.1 DUF3087 domain-containing protein -

Sequence

Protein


Download         Length: 45 a.a.        Molecular weight: 4563.26 Da        Isoelectric Point: 8.5512

>NTDB_id=785718 PSH69_RS11520 WP_305412069.1 2543281..2543418(+) (nucA/comI) [Pseudomonas sp. FP1740]
MFKEGGAGASVRPISPKDNMGAGACIGNACRGLSDGEKVRIKVVD

Nucleotide


Download         Length: 138 bp        

>NTDB_id=785718 PSH69_RS11520 WP_305412069.1 2543281..2543418(+) (nucA/comI) [Pseudomonas sp. FP1740]
ATGTTTAAGGAAGGTGGGGCGGGAGCGAGTGTTAGACCTATAAGTCCGAAGGATAATATGGGGGCTGGTGCATGCATAGG
GAATGCATGTCGCGGGTTGTCTGATGGAGAGAAAGTCAGGATTAAGGTGGTGGACTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.41

86.667

0.489