Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PSH60_RS24845 Genome accession   NZ_CP117456
Coordinates   5440535..5441902 (-) Length   455 a.a.
NCBI ID   WP_038453821.1    Uniprot ID   A0A1N7U1M4
Organism   Pseudomonas simiae strain FP1885     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5435535..5446902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH60_RS24825 (PSH60_24820) yjiA 5436567..5437526 (-) 960 WP_010206678.1 GTPase -
  PSH60_RS24830 (PSH60_24825) - 5437683..5437880 (-) 198 WP_003194308.1 YbdD/YjiX family protein -
  PSH60_RS24835 (PSH60_24830) - 5437896..5439962 (-) 2067 WP_010206680.1 carbon starvation CstA family protein -
  PSH60_RS24840 (PSH60_24835) - 5440137..5440505 (+) 369 WP_021492933.1 PilZ domain-containing protein -
  PSH60_RS24845 (PSH60_24840) radA 5440535..5441902 (-) 1368 WP_038453821.1 DNA repair protein RadA Machinery gene
  PSH60_RS24850 (PSH60_24845) - 5441938..5442477 (-) 540 WP_010206683.1 ankyrin repeat domain-containing protein -
  PSH60_RS24855 (PSH60_24850) katB 5442536..5444065 (-) 1530 WP_198581773.1 catalase KatB -
  PSH60_RS24860 (PSH60_24855) mscL 5444365..5444784 (+) 420 WP_010206685.1 large-conductance mechanosensitive channel protein MscL -
  PSH60_RS24865 (PSH60_24860) - 5444830..5445606 (-) 777 WP_010206686.1 ferredoxin--NADP reductase -
  PSH60_RS24870 (PSH60_24865) - 5445973..5446683 (+) 711 WP_021492936.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48746.23 Da        Isoelectric Point: 6.8987

>NTDB_id=785594 PSH60_RS24845 WP_038453821.1 5440535..5441902(-) (radA) [Pseudomonas simiae strain FP1885]
MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGITIIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=785594 PSH60_RS24845 WP_038453821.1 5440535..5441902(-) (radA) [Pseudomonas simiae strain FP1885]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAATGTACCGAATG
CGGTGCGTGGAACACCCTGACTGAAACCATGATCGAGAGCGGTGGCGCTGCGGCCCCCACTGGCCGTGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAGACGTTGGCCGAAGTCAGTGTCGAAGAGATCCCGCGTTTCTCCACGGCCTCCGGTGAATTG
GACCGGGTGCTGGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATTGGTGGCGATCCGGGCATCGGCAAATCGACGAT
CCTGCTACAAACCTTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTATGTCACCGGTGAAGAGTCCCAGCAGCAAGTGG
CCATGCGCGCCCGTCGCCTGGGGTTGCCCCAGGATCAGTTGCGAGTGATGACCGAGACCTGCATTGAAAGCATCATTGCC
ACGGCGCGTATCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAACAACTGCAGTCGGCGCC
GGGGGGTGTGTCCCAGGTGCGTGAGAGTGCGGCGCTGCTGGTGCGCTATGCCAAGCAGAGCGGTACAGCGATCTTCCTGG
TGGGGCATGTGACCAAAGAGGGCGCACTGGCCGGGCCACGGGTGTTGGAGCACATGGTAGACACCGTGCTGTATTTCGAA
GGTGAGTCCGACGGCCGTCTGCGCTTGCTGCGGGCGGTGAAGAACCGTTTCGGCGCGGTCAACGAATTGGGCGTGTTCGC
CATGACTGACCGGGGGCTGAAAGAAGTCTCCAACCCTTCAGCGATTTTTCTCACGCGCGCCCAAGAAGAAGTCCCAGGCA
GTGTGGTGATGGCAACCTGGGAAGGCACCCGTCCGATGCTGGTGGAAGTGCAGGCCCTGGTGGATGACAGTCACTTGGCC
AACCCCCGCCGCGTGACGTTGGGCCTGGATCAGAACCGCCTGGCGATGCTGTTGGCGGTATTGCATCGCCACGGTGGCAT
CCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACGGCATCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGTAACCGGCCGTTGCCCCATGACTTGCTGGTGTTTGGTGAAGTCGGTTTGTCCGGT
GAAGTGCGCCCGGTGCCCAGCGGCCAGGAGCGCCTCAAGGAAGCGGCCAAGCACGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAATGCGCCGAAGGAATCACCGCCGGGGATCACGATTATTGGCGTGACGCGGTTGGAACAGGCGTTGGATGCGTTGT
TCGAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1N7U1M4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468
  radA Streptococcus pneumoniae Rx1

46.711

100

0.468
  radA Streptococcus pneumoniae D39

46.711

100

0.468
  radA Streptococcus pneumoniae R6

46.711

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.711

100

0.468