Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PSH78_RS24370 Genome accession   NZ_CP117452
Coordinates   5367209..5368273 (-) Length   354 a.a.
NCBI ID   WP_305497354.1    Uniprot ID   -
Organism   Pseudomonas sp. FP198     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5362209..5373273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH78_RS24345 (PSH78_24340) aroK 5362889..5363407 (-) 519 WP_181290818.1 shikimate kinase AroK -
  PSH78_RS24350 (PSH78_24345) pilQ 5363412..5365484 (-) 2073 WP_305497350.1 type IV pilus secretin PilQ Machinery gene
  PSH78_RS24355 (PSH78_24350) - 5365481..5366026 (-) 546 WP_305497351.1 pilus assembly protein PilP -
  PSH78_RS24360 (PSH78_24355) pilO 5366023..5366646 (-) 624 WP_305497352.1 type 4a pilus biogenesis protein PilO -
  PSH78_RS24365 (PSH78_24360) - 5366643..5367209 (-) 567 WP_305497353.1 PilN domain-containing protein -
  PSH78_RS24370 (PSH78_24365) comM 5367209..5368273 (-) 1065 WP_305497354.1 pilus assembly protein PilM Machinery gene
  PSH78_RS24375 (PSH78_24370) - 5368482..5370926 (+) 2445 WP_305501381.1 penicillin-binding protein 1A -
  PSH78_RS24380 (PSH78_24375) - 5371176..5372444 (-) 1269 WP_305497355.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38032.60 Da        Isoelectric Point: 4.9070

>NTDB_id=785492 PSH78_RS24370 WP_305497354.1 5367209..5368273(-) (comM) [Pseudomonas sp. FP198]
MLRLFNKKAHALLGIDISSTSVKLLELSRQGDRLRVESYAVEPLPANAVVEKNIAELEGVGQALSRVLAKARTPLRNVAV
AVAGSAVITKTIEMDAGLSDDDMENQLKIEADQYIPYPLDEVAIDFEVVGVSSRSAERVEVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERAFGLLATQLAASQERLTVAVIDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTP
EQAGLAKKQGGLPDDYLGEVLQPFREALVQQVSRSLQFFFASGQYSAVDHILLAGGTASVAGLDRLIEQRLGTPTQVANP
FTNMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=785492 PSH78_RS24370 WP_305497354.1 5367209..5368273(-) (comM) [Pseudomonas sp. FP198]
GTGCTACGACTCTTCAATAAAAAAGCCCATGCGCTTCTGGGGATCGACATCAGCTCGACGTCGGTGAAGCTGCTCGAATT
GAGCCGTCAGGGTGATCGTCTGCGTGTCGAGTCCTACGCTGTCGAGCCGTTGCCAGCCAATGCCGTGGTGGAAAAGAACA
TTGCCGAGCTGGAAGGGGTGGGCCAGGCGCTTTCACGAGTGCTGGCCAAGGCCAGGACACCCTTGCGCAACGTGGCGGTG
GCCGTGGCGGGGTCGGCGGTCATCACCAAGACCATCGAGATGGACGCCGGGCTGTCCGATGACGATATGGAGAACCAGCT
CAAGATCGAGGCCGACCAGTACATTCCTTATCCACTGGACGAAGTGGCGATCGATTTCGAGGTGGTCGGCGTATCGTCTC
GCAGCGCCGAGCGCGTCGAGGTGCTGTTGGCGGCGTGTCGCAAAGAGAATGTCGAGGTGCGCGAGGCGGCGCTGGCGCTT
GCCGGGCTGACGGCCCGGGTGGTCGATGTGGAAGCGTACGCGCTGGAGCGCGCGTTTGGCCTGCTCGCCACTCAGCTGGC
GGCATCCCAGGAGCGCCTGACCGTGGCGGTGATCGACATCGGAGCCACGATGACTACGCTCAGCGTGTTGCACAACGGGC
GCATCATCTACACCCGCGAGCAGCTGTTCGGTGGGCGCCAGCTTACCGAGGAAATCCAGCGCCGTTATGGCCTGACGCCG
GAGCAGGCCGGCCTGGCAAAAAAGCAGGGCGGCCTGCCGGACGACTATCTCGGCGAAGTGCTGCAACCGTTTCGCGAAGC
GCTGGTGCAGCAAGTGTCGCGTTCCCTGCAGTTTTTCTTCGCTTCAGGTCAGTACAGCGCAGTGGACCACATCCTGCTGG
CGGGAGGCACGGCCTCGGTCGCGGGCCTCGACCGTTTGATCGAGCAGCGCCTGGGCACACCTACCCAGGTGGCCAACCCG
TTTACGAACATGGCCTTGAGCAGCAAGGTCAATGCCGGTGCCCTGGCCAGTGATGCGCCAGCCCTGATGATTGCCTGCGG
GCTGGCCCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

55.932

100

0.559
  pilM Acinetobacter baumannii D1279779

55.65

100

0.557
  comM Acinetobacter baylyi ADP1

54.52

100

0.545
  pilM Legionella pneumophila strain ERS1305867

46.893

100

0.469