Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PSH78_RS04135 Genome accession   NZ_CP117452
Coordinates   882817..884184 (+) Length   455 a.a.
NCBI ID   WP_030140305.1    Uniprot ID   A0A0B1YXD7
Organism   Pseudomonas sp. FP198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 877817..889184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH78_RS04110 (PSH78_04110) - 878067..878780 (-) 714 WP_305498679.1 autoinducer binding domain-containing protein -
  PSH78_RS04115 (PSH78_04115) - 879054..879830 (+) 777 WP_305498681.1 ferredoxin--NADP reductase -
  PSH78_RS04120 (PSH78_04120) mscL 879877..880290 (-) 414 WP_305498682.1 large-conductance mechanosensitive channel protein MscL -
  PSH78_RS04125 (PSH78_04125) katB 880575..882116 (+) 1542 WP_305498684.1 catalase KatB -
  PSH78_RS04130 (PSH78_04130) - 882226..882774 (+) 549 WP_305498686.1 ankyrin repeat domain-containing protein -
  PSH78_RS04135 (PSH78_04135) radA 882817..884184 (+) 1368 WP_030140305.1 DNA repair protein RadA Machinery gene
  PSH78_RS04140 (PSH78_04140) - 884226..884582 (-) 357 WP_305498687.1 PilZ domain-containing protein -
  PSH78_RS04145 (PSH78_04145) - 884741..886807 (+) 2067 WP_305498688.1 carbon starvation CstA family protein -
  PSH78_RS04150 (PSH78_04150) - 886823..887020 (+) 198 WP_003201656.1 YbdD/YjiX family protein -
  PSH78_RS04155 (PSH78_04155) yjiA 887224..888192 (+) 969 WP_305498689.1 GTPase -
  PSH78_RS04160 (PSH78_04160) - 888255..888800 (-) 546 WP_305498690.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48774.24 Da        Isoelectric Point: 6.8987

>NTDB_id=785472 PSH78_RS04135 WP_030140305.1 882817..884184(+) (radA) [Pseudomonas sp. FP198]
MAKAKRMYGCTECGSTFPKWAGQCSECGAWNTLTETMVESGGAAAPTGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=785472 PSH78_RS04135 WP_030140305.1 882817..884184(+) (radA) [Pseudomonas sp. FP198]
ATGGCCAAGGCAAAGCGCATGTACGGCTGCACCGAGTGCGGCTCGACCTTTCCCAAATGGGCTGGCCAATGCAGTGAGTG
CGGCGCCTGGAATACCCTGACCGAAACCATGGTGGAAAGCGGCGGGGCGGCGGCACCCACCGGGCGCACGGGTTGGGCTG
GGCAACAAGCCCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAAGAAATCCCGCGCTTTTCCACGGCGTCCGGCGAACTG
GATCGCGTGTTGGGCGGCGGTCTGGTGGATGGTTCGGTGGTACTGATCGGCGGAGATCCGGGCATCGGCAAATCCACCAT
CCTGCTGCAAACCCTGTGCAACCTCGCTACTCGCATGCCGGCGCTGTATGTCACTGGCGAAGAATCCCAGCAACAGGTCG
CGATGCGCGCACGACGGCTGGGGTTGCCCCAGGATCAGTTGCGCGTCATGACCGAGACTTGCATCGAAACCATCATCGCC
ACGGCGCGCCTGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATTTTTACCGAACAGCTGCAATCGGCACC
GGGTGGCGTGTCCCAGGTGCGCGAAAGCGCGGCGCTGCTGGTGCGTTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGTCACGTCACCAAGGAAGGCGCGCTGGCGGGCCCTCGGGTGCTGGAGCACATGGTCGATACGGTGTTGTATTTCGAA
GGCGAATCGGACGGTCGCCTGCGTTTGTTGCGAGCGGTGAAGAACCGTTTTGGCGCCGTCAACGAGTTGGGCGTGTTCGG
CATGACTGACCGGGGCCTGAAGGAAGTCTCCAACCCTTCGGCGATTTTTCTCACGCGTGCCCAGGAAGAGGTTCCGGGTA
GCGTGGTCATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCACCTGGCG
AATCCGCGCCGGGTCACCCTGGGCCTGGATCAGAACCGGCTCGCCATGCTGTTGGCTGTCTTGCACCGGCACGGCGGCAT
CCCTACCCACGACCAGGATGTATTCCTCAACGTGGTGGGCGGGGTGAAGGTATTGGAGACCGCGTCCGACCTGGCATTGA
TGGCGGCCGTGATGTCCAGCCTGCGCAATCGGCCGCTGCCGCATGATTTGCTGGTGTTCGGTGAGGTCGGGCTTTCGGGT
GAAGTGCGACCAGTGCCCAGCGGGCAGGAGCGGCTCAAGGAAGCGGCCAAACATGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAATGCGCCGAAGGAAGCGCCGGCGGGGCTGCAGATCATTGCGGTGACGCGGTTGGAGCAGGCGTTGGATGCGTTGT
TCGAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B1YXD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus mitis NCTC 12261

46.087

100

0.466
  radA Streptococcus mitis SK321

46.272

100

0.464