Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   PSH78_RS01935 Genome accession   NZ_CP117452
Coordinates   396095..396523 (+) Length   142 a.a.
NCBI ID   WP_305498188.1    Uniprot ID   -
Organism   Pseudomonas sp. FP198     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 391095..401523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH78_RS01910 (PSH78_01910) pyrR 392120..392626 (-) 507 WP_305498180.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  PSH78_RS01915 (PSH78_01915) ruvX 392709..393146 (-) 438 WP_305498182.1 Holliday junction resolvase RuvX -
  PSH78_RS01920 (PSH78_01920) - 393146..393715 (-) 570 WP_305498183.1 YqgE/AlgH family protein -
  PSH78_RS01925 (PSH78_01925) - 393906..394802 (-) 897 WP_305498184.1 energy transducer TonB -
  PSH78_RS01930 (PSH78_01930) gshB 394899..395870 (-) 972 WP_305498186.1 glutathione synthase -
  PSH78_RS01935 (PSH78_01935) pilG 396095..396523 (+) 429 WP_305498188.1 twitching motility response regulator PilG Regulator
  PSH78_RS01940 (PSH78_01940) pilH 396572..396937 (+) 366 WP_186612056.1 twitching motility response regulator PilH -
  PSH78_RS01945 (PSH78_01945) - 396948..397487 (+) 540 WP_305498192.1 chemotaxis protein CheW -
  PSH78_RS01950 (PSH78_01950) - 397641..399701 (+) 2061 WP_305498193.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15530.00 Da        Isoelectric Point: 7.4360

>NTDB_id=785469 PSH78_RS01935 WP_305498188.1 396095..396523(+) (pilG) [Pseudomonas sp. FP198]
MAEHLTQQQPSALKVMVIDDSKTIRRTAETLLRNVGCEVITAVDGFDAMAKIVDHHPGIIFVDIMMPRLDGYQTCALIKN
NSAFKATPVIMLSSRDGLFDKAKGRIVGSDQFLTKPFSKEELLGAIQAHVPGFAAVQSHQAH

Nucleotide


Download         Length: 429 bp        

>NTDB_id=785469 PSH78_RS01935 WP_305498188.1 396095..396523(+) (pilG) [Pseudomonas sp. FP198]
ATGGCAGAGCATCTCACGCAGCAGCAACCCAGCGCCTTGAAGGTCATGGTCATCGACGACTCGAAGACCATCCGCCGCAC
GGCCGAGACCTTGCTGCGCAACGTTGGCTGCGAGGTCATCACGGCGGTCGACGGCTTCGACGCCATGGCCAAGATCGTCG
ACCACCATCCAGGCATCATCTTTGTCGACATCATGATGCCGCGCCTGGACGGTTACCAGACCTGTGCCCTGATCAAGAAC
AACAGCGCCTTCAAGGCGACGCCGGTGATCATGCTGTCGTCCCGCGACGGTCTGTTCGACAAGGCCAAGGGGCGCATCGT
CGGCTCCGATCAGTTTCTGACCAAGCCTTTCAGCAAGGAAGAATTGCTGGGCGCGATACAGGCCCATGTCCCGGGTTTTG
CCGCTGTCCAGTCGCACCAGGCACATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(15-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.271

83.099

0.634