Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PSH76_RS25905 Genome accession   NZ_CP117447
Coordinates   5720498..5721865 (-) Length   455 a.a.
NCBI ID   WP_003194313.1    Uniprot ID   A0AAJ3JSD5
Organism   Pseudomonas sp. FP215     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5715498..5726865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH76_RS25885 (PSH76_25875) yjiA 5716431..5717390 (-) 960 WP_305493122.1 GTPase -
  PSH76_RS25890 (PSH76_25880) - 5717547..5717744 (-) 198 WP_003194308.1 YbdD/YjiX family protein -
  PSH76_RS25895 (PSH76_25885) - 5717760..5719826 (-) 2067 WP_003194310.1 carbon starvation CstA family protein -
  PSH76_RS25900 (PSH76_25890) - 5720001..5720369 (+) 369 WP_094774581.1 PilZ domain-containing protein -
  PSH76_RS25905 (PSH76_25895) radA 5720498..5721865 (-) 1368 WP_003194313.1 DNA repair protein RadA Machinery gene
  PSH76_RS25910 (PSH76_25900) - 5721901..5722440 (-) 540 WP_003194316.1 ankyrin repeat domain-containing protein -
  PSH76_RS25915 (PSH76_25905) katB 5722498..5724039 (-) 1542 WP_305493123.1 catalase KatB -
  PSH76_RS25920 (PSH76_25910) mscL 5724328..5724744 (+) 417 WP_305493124.1 large-conductance mechanosensitive channel protein MscL -
  PSH76_RS25925 (PSH76_25915) - 5724786..5725562 (-) 777 WP_056792028.1 ferredoxin--NADP reductase -
  PSH76_RS25930 (PSH76_25920) - 5726009..5726719 (+) 711 WP_032895231.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48757.26 Da        Isoelectric Point: 6.8987

>NTDB_id=785345 PSH76_RS25905 WP_003194313.1 5720498..5721865(-) (radA) [Pseudomonas sp. FP215]
MAKAKRMYGCTECGATFPKWAGQCSECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=785345 PSH76_RS25905 WP_003194313.1 5720498..5721865(-) (radA) [Pseudomonas sp. FP215]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACAGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGCTCCGAATG
CGGCGCGTGGAACACCCTGACTGAAACCATGATCGAGAGCGGCGGTGCCGCGGCCCCCACCGGCCGTGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAGATCCCGCGCTTTTCCACCGCCTCCGGCGAACTG
GACCGGGTATTGGGCGGGGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGTGACCCGGGCATCGGCAAGTCCACGAT
CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGTATGCCAGCGCTGTATGTCACCGGCGAAGAGTCCCAGCAGCAAGTGG
CCATGCGCGCCCGGCGCCTGGGCTTGCCTCAGGATCAGTTGCGGGTGATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCGCGCATCGAAAAGCCCAAAGTCATGGTCATTGACTCGATCCAGACGATTTTCACCGAACAACTGCAATCGGCACC
CGGCGGCGTGTCCCAGGTGCGCGAAAGCGCGGCGCTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCACGTGACCAAGGAAGGCGCACTGGCCGGGCCACGGGTGTTGGAACACATGGTCGACACCGTGTTGTATTTCGAA
GGGGAGTCCGACGGTCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTTGGCGCCGTCAACGAACTGGGTGTGTTTGC
CATGACTGACCGGGGGCTGAAAGAAGTCTCGAACCCCTCCGCGATTTTTCTCACCCGCGCCCAGGAAGAAGTCCCAGGCA
GCGTGGTGATGGCGACGTGGGAAGGCACTCGGCCAATGCTTGTGGAAGTCCAGGCGCTGGTGGATGACAGCCATTTGGCC
AACCCACGGCGCGTCACCCTGGGCCTGGACCAGAACCGCCTGGCGATGTTGCTGGCGGTGCTGCACCGGCATGGCGGCAT
TCCGACCCACGATCAGGATGTGTTCCTTAACGTGGTGGGCGGAGTCAAGGTGCTGGAGACCGCGTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGTAACCGGCCGTTGCCCCATGACTTGCTGGTGTTTGGCGAGGTGGGTTTGTCGGGC
GAAGTACGCCCGGTGCCGAGTGGGCAGGAGCGCTTGAAGGAAGCGGCCAAGCATGGCTTCAAACGTGCGATTGTGCCCAA
GGGCAATGCGCCGAAGGAGGCGCCGCCGGGGTTGCAGATTATTGCAGTGACACGCTTGGAACAGGCGTTGGATGCGCTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus pneumoniae Rx1

46.522

100

0.47
  radA Streptococcus pneumoniae R6

46.522

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.522

100

0.47
  radA Streptococcus pneumoniae D39

46.522

100

0.47
  radA Streptococcus mitis SK321

46.711

100

0.468
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466