Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PSH79_RS23765 Genome accession   NZ_CP117445
Coordinates   5307163..5308530 (-) Length   455 a.a.
NCBI ID   WP_007909773.1    Uniprot ID   J2YZH4
Organism   Pseudomonas sp. FP2196     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5302163..5313530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH79_RS23740 (PSH79_23735) - 5302345..5303055 (+) 711 WP_305439901.1 GntR family transcriptional regulator -
  PSH79_RS23745 (PSH79_23740) yjiA 5303109..5304080 (-) 972 WP_305439903.1 GTPase -
  PSH79_RS23750 (PSH79_23745) - 5304235..5304432 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  PSH79_RS23755 (PSH79_23750) - 5304448..5306514 (-) 2067 WP_305439904.1 carbon starvation CstA family protein -
  PSH79_RS23760 (PSH79_23755) - 5306674..5307042 (+) 369 WP_305439906.1 PilZ domain-containing protein -
  PSH79_RS23765 (PSH79_23760) radA 5307163..5308530 (-) 1368 WP_007909773.1 DNA repair protein RadA Machinery gene
  PSH79_RS23770 (PSH79_23765) - 5308576..5309121 (-) 546 WP_305439907.1 ankyrin repeat domain-containing protein -
  PSH79_RS23775 (PSH79_23770) - 5309182..5310723 (-) 1542 WP_305439908.1 catalase -
  PSH79_RS23780 (PSH79_23775) mscL 5311010..5311423 (+) 414 WP_305439909.1 large-conductance mechanosensitive channel protein MscL -
  PSH79_RS23785 (PSH79_23780) - 5311467..5312243 (-) 777 WP_305439910.1 ferredoxin--NADP reductase -
  PSH79_RS23790 (PSH79_23785) - 5312563..5313276 (+) 714 WP_305439911.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48773.25 Da        Isoelectric Point: 6.8987

>NTDB_id=785298 PSH79_RS23765 WP_007909773.1 5307163..5308530(-) (radA) [Pseudomonas sp. FP2196]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGATAPTGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=785298 PSH79_RS23765 WP_007909773.1 5307163..5308530(-) (radA) [Pseudomonas sp. FP2196]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGCCAGTGTGGCGAGTG
CGGTGCCTGGAACACCTTGACCGAAACCATGATCGAGAGCGGCGGCGCGACGGCGCCCACCGGTCGCACCGGTTGGGCCG
GGCAACAGGCGCAGATCAAGACGCTGGCCGAAGTCAGCATCGAAGAAATTCCGCGGTTTTCTACTGCCTCCGGAGAACTG
GACCGGGTGCTCGGTGGCGGGCTGGTCGATGGCTCGGTAGTGCTGATTGGTGGTGATCCGGGGATCGGCAAGTCAACGAT
TCTGTTGCAGACCCTTTGCAACCTCGCCAAGAGCATGCCGGCACTGTACGTCACCGGCGAAGAATCCCAGCAGCAAGTAG
CCATGCGCGCCCGTCGCCTCGGCTTACCGCAGGATCAACTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATCGCC
ACTGCTCGTCAGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAGCAACTGCAATCGGCGCC
CGGCGGCGTGTCCCAGGTGCGCGAAAGTGCGGCGCTGCTGGTGAGATACGCCAAGCAAAGCGGCACTGCGATTTTCCTCG
TCGGCCACGTCACCAAGGAAGGCGCGCTTGCCGGCCCGCGCGTGCTGGAACACATGGTCGACACCGTGCTGTATTTCGAA
GGTGAATCCGATGGCCGTTTGCGTTTGCTGCGGGCGGTGAAAAACCGTTTTGGTGCGGTCAACGAACTCGGTGTGTTCGG
CATGACCGACAAGGGACTTAAAGAAGTCTCAAACCCATCGGCGATTTTTCTCACCCGCGCTCAGGAAGAGGTCCCGGGCA
GTGTGGTGATGGCGACGTGGGAGGGCACTCGGCCGATGCTGGTGGAAGTGCAGGCGCTGGTCGATGACAGTCATCTGGCC
AACCCGCGCCGGGTGACGCTGGGTCTTGATCAGAACCGATTGGCGATGTTGCTGGCGGTTCTGCATCGACACGGCGGCAT
TCCGACCCATGATCAGGACGTCTTCCTTAACGTGGTCGGCGGGGTGAAGGTGCTGGAAACGGCGTCTGACCTGGCGCTGA
TGGCGGCTGTCATGTCGAGCTTGCGCAATCGACCATTGCCGCATGACCTGTTGGTGTTCGGTGAAGTGGGTCTGTCCGGC
GAAGTGCGTCCGGTGCCGAGCGGGCAGGAGCGATTGAAGGAAGCCGCCAAGCATGGATTCAAACGGGCGATCGTGCCCAA
GGGCAACGCGCCAAAAGAGTCGCCGCCGGGCTTGCAGATCATCGCCGTGACCCGCCTGGAACAGGCCCTCGACGCGCTCT
TCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2YZH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464
  radA Streptococcus pneumoniae Rx1

46.272

100

0.464
  radA Streptococcus pneumoniae D39

46.272

100

0.464
  radA Streptococcus pneumoniae R6

46.272

100

0.464
  radA Streptococcus pneumoniae TIGR4

46.272

100

0.464