Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JLF34_RS15120 Genome accession   NZ_AP022536
Coordinates   3142338..3142967 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain THO-008     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3137338..3147967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLF34_RS15105 (THOESC008_29260) helD 3137580..3139634 (-) 2055 WP_001305911.1 DNA helicase IV -
  JLF34_RS15110 (THOESC008_29270) yccF 3139757..3140203 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JLF34_RS15115 (THOESC008_29280) yccS 3140213..3142375 (+) 2163 WP_000875037.1 YccS family putative transporter -
  JLF34_RS15120 (THOESC008_29290) sxy/tfoX 3142338..3142967 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JLF34_RS15125 (THOESC008_29300) sulA 3143186..3143695 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JLF34_RS15130 (THOESC008_29310) ompA 3144052..3145104 (+) 1053 WP_001305912.1 porin OmpA -
  JLF34_RS15135 (THOESC008_29320) matP 3145181..3145633 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JLF34_RS15140 (THOESC008_29330) ycbZ 3145819..3147579 (+) 1761 WP_001586869.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=78515 JLF34_RS15120 WP_000839153.1 3142338..3142967(-) (sxy/tfoX) [Escherichia coli strain THO-008]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=78515 JLF34_RS15120 WP_000839153.1 3142338..3142967(-) (sxy/tfoX) [Escherichia coli strain THO-008]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGTGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment