Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PSH96_RS24990 Genome accession   NZ_CP117436
Coordinates   5531142..5532509 (-) Length   455 a.a.
NCBI ID   WP_305455849.1    Uniprot ID   -
Organism   Pseudomonas sp. FP2338     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5526142..5537509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH96_RS24970 (PSH96_24965) yjiA 5527058..5528062 (-) 1005 WP_305455843.1 GTPase -
  PSH96_RS24975 (PSH96_24970) - 5528194..5528391 (-) 198 WP_003176208.1 YbdD/YjiX family protein -
  PSH96_RS24980 (PSH96_24975) - 5528407..5530473 (-) 2067 WP_200431478.1 carbon starvation CstA family protein -
  PSH96_RS24985 (PSH96_24980) - 5530647..5531015 (+) 369 WP_305455847.1 PilZ domain-containing protein -
  PSH96_RS24990 (PSH96_24985) radA 5531142..5532509 (-) 1368 WP_305455849.1 DNA repair protein RadA Machinery gene
  PSH96_RS24995 (PSH96_24990) - 5532545..5533084 (-) 540 WP_219269353.1 ankyrin repeat domain-containing protein -
  PSH96_RS25000 (PSH96_24995) - 5533140..5534681 (-) 1542 WP_370694315.1 catalase -
  PSH96_RS25005 (PSH96_25000) mscL 5534969..5535385 (+) 417 WP_056858221.1 large-conductance mechanosensitive channel protein MscL -
  PSH96_RS25010 (PSH96_25005) - 5535431..5536207 (-) 777 WP_305455853.1 ferredoxin--NADP reductase -
  PSH96_RS25015 (PSH96_25010) - 5536633..5537343 (+) 711 WP_305455856.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48735.31 Da        Isoelectric Point: 7.1316

>NTDB_id=785069 PSH96_RS24990 WP_305455849.1 5531142..5532509(-) (radA) [Pseudomonas sp. FP2338]
MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNKPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPAGLKVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=785069 PSH96_RS24990 WP_305455849.1 5531142..5532509(-) (radA) [Pseudomonas sp. FP2338]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGCACCGAGTG
CGGTGCATGGAACACCCTGACGGAAACCATGATCGAAAGCGGCGGCGCTGCAGCCCCCACCGGCCGTGCCGGTTGGACCG
GGCAGCAGGCGCAGATCAAGACGTTGGCCGAAGTCAGCGTCGAAGAAATCCCGCGTTTCTCCACCGCGTCCGGCGAGCTG
GACCGCGTACTGGGCGGCGGGCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAATCGACCAT
CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCACTCTACGTCACCGGTGAAGAATCCCAGCAGCAAGTGG
CCATGCGCGCCCGCCGCCTGGGCTTGCCCCAGGATCAACTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCGCGCGTCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAGCTGCAATCGGCACC
TGGCGGCGTGTCCCAGGTGCGTGAAAGCGCGGCGCTGCTAGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCACGTAACCAAAGAAGGCGCGCTGGCCGGGCCGCGGGTGCTTGAGCATATGGTCGACACCGTGCTGTATTTTGAA
GGCGAATCCGATGGCCGCCTGCGTTTGCTGCGGGCGGTGAAGAACCGCTTTGGAGCGGTCAACGAGTTGGGCGTGTTCGC
CATGACTGACCGCGGCTTGAAAGAAGTCTCCAACCCGTCAGCCATTTTTCTCACACGTGCCCAGGAAGAAGTGCCGGGAA
GTGTGGTGATGGCGACGTGGGAAGGCACCCGCCCGATGTTGGTGGAAGTGCAGGCGCTGGTGGATGACAGCCACTTGGCC
AACCCACGGCGTGTCACGCTCGGCCTGGATCAGAACCGCTTGGCGATGCTGTTGGCGGTGCTGCACCGTCACGGCGGCAT
TCCCACCCATGACCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCTTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCCAGTCTGCGTAACAAGCCGTTGCCCCATGACTTGCTGGTGTTTGGTGAGGTCGGCCTGTCGGGC
GAGGTGCGCCCGGTGCCGAGCGGCCAGGAGCGTTTGAAGGAAGCGGCCAAGCACGGCTTCAAACGCGCGATCGTGCCCAA
GGGTAATGCGCCGAAGGAAATGCCGGCGGGGTTGAAGGTGATTGGCGTCACGCGGCTGGAACAGGCGCTGGATGCACTGT
TCGAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.059

100

0.475
  radA Streptococcus mitis NCTC 12261

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47