Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PSH58_RS24590 Genome accession   NZ_CP117434
Coordinates   5447468..5449060 (+) Length   530 a.a.
NCBI ID   WP_305385944.1    Uniprot ID   -
Organism   Pseudomonas hefeiensis strain FP53     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5442468..5454060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH58_RS24570 (PSH58_24570) pgeF 5444264..5444989 (-) 726 WP_305385943.1 peptidoglycan editing factor PgeF -
  PSH58_RS24575 (PSH58_24575) rluD 5444986..5445952 (-) 967 Protein_4844 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSH58_RS24580 (PSH58_24580) - 5446104..5447120 (+) 1017 WP_047229874.1 outer membrane protein assembly factor BamD -
  PSH58_RS24585 (PSH58_24585) - 5447245..5447478 (+) 234 WP_256233125.1 PP0621 family protein -
  PSH58_RS24590 (PSH58_24590) pilS 5447468..5449060 (+) 1593 WP_305385944.1 ATP-binding protein Regulator
  PSH58_RS24595 (PSH58_24595) pilR 5449057..5450403 (+) 1347 WP_305385945.1 sigma-54 dependent transcriptional regulator Regulator
  PSH58_RS24600 (PSH58_24600) - 5450624..5450980 (-) 357 WP_305385946.1 DUF6124 family protein -
  PSH58_RS24605 (PSH58_24605) thiO 5452397..5453497 (-) 1101 WP_305385947.1 glycine oxidase ThiO -
  PSH58_RS24610 (PSH58_24610) - 5453553..5453954 (-) 402 WP_305385948.1 type IV pilin protein -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 59059.91 Da        Isoelectric Point: 7.4117

>NTDB_id=785021 PSH58_RS24590 WP_305385944.1 5447468..5449060(+) (pilS) [Pseudomonas hefeiensis strain FP53]
MIAEQTPSPRVKQTQRLLRLYHLYRLSIGITLVLLISSNMDNRLLEFANDDWLRSGSWLYLILNILLVVFLENARRPARL
FGLALTDVLLLSWLFFAAGGAPSAIGNLLIVSVAIGNTLLRGRIGLLIAAVATLGIVGSTLFLDLSDSSRPSSYLQAGTL
GALCFAAALLVQGLTRRLEASETLAEQRASEVIGLEALNALILQRMRTGILVLDRQRRVQLANESALNLLGMHDLVGQRL
DDCSSALVERLQLWLNNPSLRPQSLTITGTGLTLQPSFIALGHHDQHQILVFLEDQAQVAQHAQQLKLASLGRLTAGIAH
EIRNPLGAISHAAQLLRESEELNSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTAQRLDLRIWLDQFVRLARESAAE
HQQLHLNIDPGDYTTLMDPDQLNQVLDNLLRNAWRHSAMVHEQAEVWLKLFIDPHSQLSTLDIIDNGPGVTPDQQAHLFE
PFFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=785021 PSH58_RS24590 WP_305385944.1 5447468..5449060(+) (pilS) [Pseudomonas hefeiensis strain FP53]
GTGATCGCTGAGCAGACCCCAAGCCCTCGCGTCAAACAGACGCAGCGCTTGCTGCGTCTTTATCACCTGTACCGCTTAAG
CATCGGCATCACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGGAGTTCGCCAACGACGATTGGCTGC
GCAGCGGCAGTTGGCTGTACCTGATACTGAATATCCTGCTGGTAGTGTTTCTTGAGAACGCGCGCCGACCTGCCCGGCTG
TTCGGCCTGGCACTGACCGACGTGCTGTTGCTGTCGTGGCTGTTCTTCGCCGCTGGTGGCGCCCCCAGCGCCATCGGCAA
CCTGCTCATTGTCTCGGTGGCCATCGGCAATACGCTGCTGCGAGGCCGAATCGGGTTGTTGATCGCCGCTGTCGCCACGC
TTGGCATCGTCGGATCAACCTTGTTCCTCGACCTCAGCGATTCGAGCCGTCCCAGCAGTTACCTGCAAGCCGGCACCCTG
GGGGCTTTGTGTTTTGCCGCCGCACTCCTGGTGCAGGGCCTGACCCGACGACTGGAAGCCAGCGAAACCCTGGCCGAACA
ACGCGCCAGCGAAGTGATCGGCCTCGAAGCGCTCAACGCGCTGATCCTGCAACGCATGCGCACCGGTATCCTGGTGCTCG
ACCGTCAGCGCCGGGTGCAATTGGCCAATGAAAGCGCGTTGAACCTGCTGGGTATGCACGATCTGGTCGGCCAGCGGCTC
GACGACTGCTCCAGCGCCCTGGTCGAACGCCTGCAACTGTGGTTGAACAACCCCAGCCTGCGTCCGCAAAGCCTGACCAT
CACCGGCACAGGCCTGACCCTGCAACCGAGCTTCATCGCCCTGGGGCATCACGATCAGCACCAGATCCTGGTCTTCCTCG
AAGACCAGGCCCAAGTGGCCCAGCACGCCCAGCAGTTGAAACTCGCGTCCCTGGGGCGCCTCACCGCCGGTATCGCCCAT
GAAATCCGCAACCCGTTGGGGGCAATCAGCCATGCGGCGCAATTGCTGCGCGAGTCCGAGGAACTGAACAGCGCGGATCG
GCGTCTGACGCAGATCATCCAGGATCACTCCCAACGAATGAACCGCGTCATTGAAAACGTCCTGCAACTGTCCCGCCGCC
AGCAAACCACAGCGCAGCGGCTGGACCTGCGGATCTGGCTAGACCAGTTCGTCCGCCTGGCCCGGGAAAGCGCGGCCGAG
CATCAGCAATTGCACCTGAACATCGACCCTGGCGACTACACCACGCTGATGGACCCTGATCAGTTGAACCAGGTGCTCGA
CAACCTGCTGCGCAACGCCTGGCGACACAGCGCGATGGTCCATGAACAGGCCGAGGTCTGGCTGAAGCTGTTCATCGATC
CCCACAGCCAGTTGTCCACGCTGGACATTATCGACAACGGCCCCGGCGTCACGCCGGATCAACAAGCCCATCTGTTCGAA
CCCTTCTTCACTACCAGCAGCCAGGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCG
CCTAGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(310-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.039

97.736

0.587