Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LLL8_RS00360 Genome accession   NZ_AP025700
Coordinates   71638..72423 (-) Length   261 a.a.
NCBI ID   WP_021722894.1    Uniprot ID   -
Organism   Lactococcus lactis strain L8     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 66638..77423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLL8_RS00340 (LLL8_00590) - 68525..68761 (+) 237 WP_058202933.1 hypothetical protein -
  LLL8_RS00345 (LLL8_00600) rpmG 69087..69236 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  LLL8_RS00350 (LLL8_00610) rpmF 69266..69439 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  LLL8_RS00355 (LLL8_00620) - 69803..71584 (+) 1782 WP_251900007.1 heavy metal translocating P-type ATPase -
  LLL8_RS00360 (LLL8_00630) spo0J 71638..72423 (-) 786 WP_021722894.1 ParB/RepB/Spo0J family partition protein Regulator
  LLL8_RS00365 (LLL8_00640) rarA 72478..73737 (-) 1260 WP_010905110.1 replication-associated recombination protein A Machinery gene
  LLL8_RS00370 (LLL8_00650) - 73781..74269 (-) 489 WP_251900008.1 GNAT family N-acetyltransferase -
  LLL8_RS00375 (LLL8_00660) - 74422..74889 (+) 468 WP_010905112.1 DUF3013 family protein -
  LLL8_RS00380 (LLL8_00670) - 74919..76472 (+) 1554 WP_251900009.1 ABC-F family ATP-binding cassette domain-containing protein -
  LLL8_RS00385 (LLL8_00680) - 76475..76924 (+) 450 WP_228248448.1 hypothetical protein -
  LLL8_RS00390 (LLL8_00690) - 76951..77217 (+) 267 WP_251900010.1 hypothetical protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29755.63 Da        Isoelectric Point: 9.5731

>NTDB_id=78497 LLL8_RS00360 WP_021722894.1 71638..72423(-) (spo0J) [Lactococcus lactis strain L8]
MVEQITQLKLSTIVKNPYQPRLVFDEDKLKELANSIQENGVLQPIIVRKSKLVGYELLAGERRFQASKLAGLETIPAIIR
SYSDEEMMTLSILENLQRENLNPLEESKSLAQLADKLGMTHDQIAKALGKSRSYVSNLIRLLGLPDTILKHVENREISPA
HARTLLAEKNPKKQLELVDKIIKEQLNVRALEAIIYGEEKVTDKSVSKLNINLFTDETEKELMKKLGNRVKIQANKKYQG
NLSIHFDNLDELEHLIKLLKK

Nucleotide


Download         Length: 786 bp        

>NTDB_id=78497 LLL8_RS00360 WP_021722894.1 71638..72423(-) (spo0J) [Lactococcus lactis strain L8]
ATGGTAGAACAAATCACTCAACTTAAGTTGTCAACAATTGTAAAAAACCCTTACCAGCCTCGTCTTGTTTTTGATGAGGA
TAAATTAAAAGAATTGGCTAATTCTATCCAAGAAAATGGCGTTTTACAACCCATAATCGTTCGTAAATCAAAACTTGTTG
GCTATGAGCTTTTAGCAGGTGAACGTCGGTTTCAAGCTTCAAAATTAGCTGGTTTAGAAACTATACCAGCAATTATTAGA
AGCTATTCTGATGAAGAAATGATGACTCTCTCAATTTTAGAAAATTTGCAGAGAGAAAATCTCAATCCACTAGAAGAGTC
CAAAAGCTTGGCACAACTGGCTGACAAATTGGGAATGACCCACGATCAAATCGCTAAGGCCCTTGGAAAATCAAGGTCTT
ATGTCTCTAATCTTATTCGTTTACTTGGTTTGCCTGACACAATTTTGAAGCATGTTGAAAATCGAGAGATTTCACCTGCT
CACGCTAGAACACTTTTAGCTGAAAAAAATCCTAAAAAGCAATTAGAGCTCGTTGATAAAATAATTAAAGAGCAGCTCAA
TGTCAGAGCACTTGAAGCTATTATTTATGGTGAAGAAAAAGTTACTGACAAATCTGTCAGTAAATTAAATATCAATCTTT
TTACTGACGAAACTGAAAAAGAACTGATGAAAAAATTGGGAAACAGGGTTAAGATTCAAGCAAATAAAAAATATCAAGGG
AATTTATCCATTCACTTTGATAATCTTGATGAACTAGAACATCTAATAAAATTACTAAAAAAATAA

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(147-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

48.047

98.084

0.471