Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH65_RS08020 Genome accession   NZ_CP117431
Coordinates   1749101..1749736 (+) Length   211 a.a.
NCBI ID   WP_305425708.1    Uniprot ID   -
Organism   Pseudomonas sp. FP603     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1744101..1754736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH65_RS08000 (PSH65_08000) - 1744242..1745174 (+) 933 WP_123494600.1 ABC transporter ATP-binding protein -
  PSH65_RS08005 (PSH65_08005) - 1745171..1745950 (+) 780 WP_007905224.1 ABC transporter permease -
  PSH65_RS08010 (PSH65_08010) - 1746112..1746633 (-) 522 WP_305425706.1 DUF2062 domain-containing protein -
  PSH65_RS08015 (PSH65_08015) comA 1746770..1749004 (+) 2235 WP_305425707.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH65_RS08020 (PSH65_08020) exbB 1749101..1749736 (+) 636 WP_305425708.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH65_RS08025 (PSH65_08025) - 1749733..1750161 (+) 429 WP_095634888.1 biopolymer transporter ExbD -
  PSH65_RS08030 (PSH65_08030) lpxK 1750161..1751171 (+) 1011 WP_305425709.1 tetraacyldisaccharide 4'-kinase -
  PSH65_RS08035 (PSH65_08035) - 1751197..1751382 (+) 186 WP_003174668.1 Trm112 family protein -
  PSH65_RS08040 (PSH65_08040) kdsB 1751379..1752143 (+) 765 WP_305425710.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH65_RS08045 (PSH65_08045) - 1752143..1752608 (+) 466 Protein_1584 low molecular weight protein-tyrosine-phosphatase -
  PSH65_RS08050 (PSH65_08050) murB 1752605..1753624 (+) 1020 WP_305425712.1 UDP-N-acetylmuramate dehydrogenase -
  PSH65_RS08055 (PSH65_08055) - 1753861..1754331 (+) 471 WP_038982082.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22911.10 Da        Isoelectric Point: 7.2808

>NTDB_id=784945 PSH65_RS08020 WP_305425708.1 1749101..1749736(+) (exbB) [Pseudomonas sp. FP603]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEYLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLSGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=784945 PSH65_RS08020 WP_305425708.1 1749101..1749736(+) (exbB) [Pseudomonas sp. FP603]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTTGC
CGAGCGTCTGTGGACCCTGCGTGCCAGCCGCGTGACCCCCGAGTACTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AACAACTCAATAAAGAAAAACTCAAGGAGCTGCGCGCCAACTCTCCGTTGGGCGAGATCCTGGCCGCCGGTCTGGCGAAC
TCCAGGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCTGCGCGGGTAATTCACGAGCTCGAACGCTACAT
CAACGCCCTTGGCACCATCGCCGCCATGGCCCCGTTGCTGGGTTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTGCGTTCATGGGCACGGGCATGGGCACCAACGCTTCAGTGCTGGCCGGTGGTATTTCCAAAGCGCTGATCACCACCGCC
GCCGGTCTGATGGTCGGCATCCCGGCCGTGTTCTTCCACCGCTTCCTGCAACGCCGCATAGATGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTCGAGGTAGTGCAGGGTGACCGCGACGTGGATCTGTCTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844