Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   M2038_RS11310 Genome accession   NZ_AP025693
Coordinates   2256686..2257156 (+) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain JICS127     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2251686..2262156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2038_RS11290 (JICS127ACC_2132) coaW 2251995..2252798 (+) 804 WP_000862727.1 type II pantothenate kinase -
  M2038_RS11295 (JICS127ACC_2133) - 2252928..2253599 (-) 672 WP_000120549.1 DUF2750 domain-containing protein -
  M2038_RS11300 (JICS127ACC_2134) - 2253998..2255191 (-) 1194 WP_000183726.1 hypothetical protein -
  M2038_RS11305 (JICS127ACC_2135) - 2255191..2256375 (-) 1185 WP_001291500.1 M20 family metallopeptidase -
  M2038_RS11310 (JICS127ACC_2136) luxS 2256686..2257156 (+) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  M2038_RS11315 (JICS127ACC_2137) - 2257308..2257658 (-) 351 WP_001024035.1 membrane protein -
  M2038_RS11320 (JICS127ACC_2138) - 2257672..2258973 (-) 1302 WP_001242318.1 pyrimidine-nucleoside phosphorylase -
  M2038_RS11325 (JICS127ACC_2139) deoC 2259252..2259914 (-) 663 WP_001083316.1 deoxyribose-phosphate aldolase -
  M2038_RS11330 (JICS127ACC_2140) deoD 2260229..2260939 (+) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  M2038_RS11335 (JICS127ACC_2141) - 2261060..2261503 (-) 444 WP_000070866.1 Dps family protein -
  M2038_RS11340 (JICS127ACC_2142) - 2261703..2262116 (-) 414 WP_001123303.1 thiol-disulfide oxidoreductase DCC family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=78487 M2038_RS11310 WP_000164421.1 2256686..2257156(+) (luxS) [Staphylococcus aureus strain JICS127]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=78487 M2038_RS11310 WP_000164421.1 2256686..2257156(+) (luxS) [Staphylococcus aureus strain JICS127]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAGGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCCG
GACTACATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTTGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65329

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404

Multiple sequence alignment