Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   Q3V78_RS03530 Genome accession   NZ_CP130538
Coordinates   746171..747139 (+) Length   322 a.a.
NCBI ID   WP_001807234.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA11-SX     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 741171..752139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V78_RS03510 nrdI 742246..742644 (+) 399 WP_000692523.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  Q3V78_RS03515 nrdE 742607..744712 (+) 2106 WP_000855505.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  Q3V78_RS03520 nrdF 744830..745801 (+) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  Q3V78_RS03525 - 745977..746132 (+) 156 WP_000499194.1 hypothetical protein -
  Q3V78_RS03530 ceuB 746171..747139 (+) 969 WP_001807234.1 ABC transporter permease Machinery gene
  Q3V78_RS03535 - 747129..748085 (+) 957 WP_001245577.1 iron chelate uptake ABC transporter family permease subunit -
  Q3V78_RS03540 - 748082..748843 (+) 762 WP_000616870.1 ABC transporter ATP-binding protein -
  Q3V78_RS03545 - 748962..749990 (+) 1029 WP_226452112.1 siderophore ABC transporter substrate-binding protein -
  Q3V78_RS03550 - 750251..750565 (-) 315 WP_001127269.1 CHY zinc finger protein -
  Q3V78_RS03555 murB 750583..751506 (-) 924 WP_000608440.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35453.99 Da        Isoelectric Point: 10.1194

>NTDB_id=784813 Q3V78_RS03530 WP_001807234.1 746171..747139(+) (ceuB) [Staphylococcus aureus strain SA11-SX]
MKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQ

Nucleotide


Download         Length: 969 bp        

>NTDB_id=784813 Q3V78_RS03530 WP_001807234.1 746171..747139(+) (ceuB) [Staphylococcus aureus strain SA11-SX]
ATGAAGTATTTATTAAAGGGAAATATTTTGCTTCTATTACTAATATTGTTGACAATTATTTCGTTGTTCATAGGTGTGAG
TGAACTATCAATTAAAGATTTACTACATTTAACTGAGTCACAGCGGAATATTTTATTCTCAAGCCGAATACCAAGGACGA
TGAGTATTTTAATTGCTGGAAGTTCGTTGGCTTTAGCAGGCTTGATAATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCGACTACAGCTGGAACGATGGAATGGGCTAAACTAGGTATTTTAATTGCTTTATTGTTCTTTCCAACCGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGTATTTGCGGTACGTTTTTATTTGTTAAAATCATTGATTTTATAAAAGTGA
AAGATGTCATTTTTGTACCGCTTCTAGGAATTATGATGGGTGGGATTGTTGCAAGTTTCACGACCTTCATCTCATTGCGC
ACGAATGCTGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGCTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCTAATCATTTCACGATTGTAGGAATGGGTAAAGACTTTACTA
ATAATTTAGGTTTGAGTTACGAAAAATTAATTAACATCGCATTGTTTATTACTGCAACTATTACAGCATTGGTAGTGGTG
ACTGTTGGAACATTACCGTTCTTAGGACTAGTAATACCAAATATTATTTCGATTTATAGAGGTGATCATTTGAAAAATGC
TATCCCTCATACGATGATGTTAGGTGCCATCTTTGTATTATTTTCTGATATAGTTGGCAGAATTGTTGTTTATCCATATG
AAATAAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTGCTTATGAAAGGTAGGAAAAATTAT
GCGCAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.5

99.379

0.472