Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PSH84_RS24485 Genome accession   NZ_CP117425
Coordinates   5515052..5516419 (-) Length   455 a.a.
NCBI ID   WP_030140305.1    Uniprot ID   A0A0B1YXD7
Organism   Pseudomonas beijingensis strain FP830     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5510052..5521419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH84_RS24455 (PSH84_24450) - 5510195..5510887 (+) 693 WP_305468573.1 GntR family transcriptional regulator -
  PSH84_RS24460 (PSH84_24455) yjiA 5510967..5511935 (-) 969 WP_122564962.1 GTPase -
  PSH84_RS24470 (PSH84_24465) - 5512122..5512318 (-) 197 Protein_4811 YbdD/YjiX family protein -
  PSH84_RS24475 (PSH84_24470) - 5512308..5514390 (-) 2083 Protein_4812 carbon starvation CstA family protein -
  PSH84_RS24480 (PSH84_24475) - 5514549..5514911 (+) 363 WP_122565109.1 PilZ domain-containing protein -
  PSH84_RS24485 (PSH84_24480) radA 5515052..5516419 (-) 1368 WP_030140305.1 DNA repair protein RadA Machinery gene
  PSH84_RS24490 (PSH84_24485) - 5516463..5516990 (-) 528 WP_240998412.1 ankyrin repeat domain-containing protein -
  PSH84_RS24495 (PSH84_24490) katB 5517164..5518707 (-) 1544 Protein_4816 catalase KatB -
  PSH84_RS24500 (PSH84_24495) mscL 5518990..5519403 (+) 414 WP_122565106.1 large-conductance mechanosensitive channel protein MscL -
  PSH84_RS24505 (PSH84_24500) - 5519574..5520350 (-) 777 WP_305468577.1 ferredoxin--NADP reductase -
  PSH84_RS24510 (PSH84_24505) - 5520641..5521354 (+) 714 WP_122565104.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48774.24 Da        Isoelectric Point: 6.8987

>NTDB_id=784791 PSH84_RS24485 WP_030140305.1 5515052..5516419(-) (radA) [Pseudomonas beijingensis strain FP830]
MAKAKRMYGCTECGSTFPKWAGQCSECGAWNTLTETMVESGGAAAPTGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=784791 PSH84_RS24485 WP_030140305.1 5515052..5516419(-) (radA) [Pseudomonas beijingensis strain FP830]
ATGGCCAAGGCAAAGCGCATGTACGGCTGCACCGAGTGCGGCTCGACCTTTCCCAAATGGGCCGGCCAATGCAGCGAATG
CGGGGCCTGGAACACCCTGACCGAAACCATGGTGGAAAGCGGCGGCGCGGCGGCCCCCACCGGGCGCACGGGCTGGGCCG
GTCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTTGAAGAAATCCCGCGATTTTCCACTGCGTCCGGTGAACTG
GACCGCGTGCTGGGTGGCGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGGGACCCGGGCATCGGCAAATCCACCAT
CTTGCTGCAAACCTTGTGCAACCTTGCCACCCGCATGCCGGCGTTGTACGTCACTGGCGAAGAGTCCCAGCAACAGGTCG
CGATGCGTGCCCGGCGCCTGGGCTTGCCCCAGGACCAATTGCGGGTCATGACCGAGACCTGCATCGAAACCATCATCGCC
ACGGCGCGCCTGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATTTTCACCGAACAGCTGCAATCGGCCCC
AGGCGGCGTGTCCCAGGTGCGTGAAAGCGCGGCGTTGCTGGTGCGCTACGCCAAACAGAGCGGCACGGCGATTTTCCTGG
TGGGCCACGTCACCAAGGAAGGCGCGTTGGCGGGGCCGCGGGTGTTGGAGCACATGGTCGATACCGTGTTGTATTTCGAA
GGCGAATCCGATGGCCGCCTGCGTTTGCTGCGGGCAGTGAAGAACCGCTTTGGTGCCGTCAACGAATTGGGTGTGTTCGG
CATGACCGACAGGGGCCTGAAAGAAGTCTCCAACCCTTCGGCGATCTTTCTCACGCGTGCTCAGGAAGAAGTCCCGGGCA
GTGTGGTCATGGCAACGTGGGAAGGGACCCGCCCGATGTTGGTCGAGGTGCAAGCATTGGTGGACGACAGCCACTTGGCG
AACCCACGGCGGGTCACCCTGGGCCTGGATCAGAATCGGCTGGCGATGCTGCTGGCGGTGTTGCATCGACACGGCGGGAT
TCCGACTCACGACCAAGACGTGTTCCTCAATGTCGTGGGCGGGGTCAAGGTACTGGAGACCGCGTCCGACCTGGCCTTGA
TGGCGGCGGTCATGTCCAGCCTGCGCAACCGGCCGCTGCCCCATGATTTGCTGGTGTTCGGTGAAGTGGGGCTGTCGGGG
GAAGTGCGACCGGTGCCCAGCGGGCAGGAGCGGCTCAAGGAGGCGGCCAAGCACGGCTTCAAACGCGCCATCGTGCCCAA
GGGCAACGCGCCGAAGGAAGCGCCGGCGGGGTTGCAGATTATCGCGGTGACCCGTCTGGAACAGGCGTTGGATGCGTTGT
TCGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B1YXD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus mitis NCTC 12261

46.087

100

0.466
  radA Streptococcus mitis SK321

46.272

100

0.464