Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH84_RS04550 Genome accession   NZ_CP117425
Coordinates   975563..976198 (+) Length   211 a.a.
NCBI ID   WP_025214875.1    Uniprot ID   -
Organism   Pseudomonas beijingensis strain FP830     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 970563..981198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH84_RS04530 (PSH84_04530) - 970666..971598 (+) 933 WP_122565905.1 ABC transporter ATP-binding protein -
  PSH84_RS04535 (PSH84_04535) - 971601..972380 (+) 780 WP_041476072.1 ABC transporter permease -
  PSH84_RS04540 (PSH84_04540) - 972559..973074 (-) 516 WP_122565904.1 DUF2062 domain-containing protein -
  PSH84_RS04545 (PSH84_04545) - 973219..975467 (+) 2249 Protein_887 DNA internalization-related competence protein ComEC/Rec2 -
  PSH84_RS04550 (PSH84_04550) exbB 975563..976198 (+) 636 WP_025214875.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH84_RS04555 (PSH84_04555) - 976195..976623 (+) 429 WP_053123850.1 biopolymer transporter ExbD -
  PSH84_RS04560 (PSH84_04560) lpxK 976623..977633 (+) 1011 WP_305482345.1 tetraacyldisaccharide 4'-kinase -
  PSH84_RS04565 (PSH84_04565) - 977657..977842 (+) 186 WP_003179363.1 Trm112 family protein -
  PSH84_RS04570 (PSH84_04570) kdsB 977839..978603 (+) 765 WP_122565901.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH84_RS04575 (PSH84_04575) - 978603..979067 (+) 465 WP_122565900.1 low molecular weight protein-tyrosine-phosphatase -
  PSH84_RS04580 (PSH84_04580) murB 979064..980083 (+) 1020 WP_122565899.1 UDP-N-acetylmuramate dehydrogenase -
  PSH84_RS04585 (PSH84_04585) - 980349..980819 (+) 471 WP_305482346.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22799.88 Da        Isoelectric Point: 7.3613

>NTDB_id=784774 PSH84_RS04550 WP_025214875.1 975563..976198(+) (exbB) [Pseudomonas beijingensis strain FP830]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYISTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKQ

Nucleotide


Download         Length: 636 bp        

>NTDB_id=784774 PSH84_RS04550 WP_025214875.1 975563..976198(+) (exbB) [Pseudomonas beijingensis strain FP830]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGTGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTGAACAAGGACAAGCTCAAGGAGCTGCGGGCCAGCTCGCCGCTCGGGGAGGTCCTCGCCGCTGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAACTGGAACGCTACAT
CAGTACCCTGGGCACCATCGCCGCCATGTCCCCGCTGCTGGGCCTGCTGGGAACGGTGCTGGGCATGATCGACATCTTCA
GCGCGTTTACCGGCTCCGGCATGACCACGAATGCCGCGGTACTGGCGGGCGGGATTTCCAAGGCCCTGATCACCACCGCC
GCCGGCCTGATGGTCGGTATCCCTGCCGTGTTCTTCCATCGGTTCCTGCAACGCCGCGTCGACGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGTGATCGTGACGTGGACCTGGCTGGGGGCAAGCAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844