Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PSH63_RS28700 Genome accession   NZ_CP117424
Coordinates   6215787..6217154 (-) Length   455 a.a.
NCBI ID   WP_024077502.1    Uniprot ID   -
Organism   Pseudomonas sp. FP833     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6210787..6222154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH63_RS28675 (PSH63_28670) yjiA 6211124..6212083 (-) 960 WP_024077498.1 GTPase -
  PSH63_RS28680 (PSH63_28675) - 6212219..6212416 (-) 198 WP_003176208.1 YbdD/YjiX family protein -
  PSH63_RS28685 (PSH63_28680) - 6212432..6214498 (-) 2067 WP_024077499.1 carbon starvation CstA family protein -
  PSH63_RS28690 (PSH63_28685) - 6214672..6215040 (+) 369 WP_024077500.1 PilZ domain-containing protein -
  PSH63_RS28695 (PSH63_28690) - 6215045..6215770 (-) 726 WP_041161303.1 hypothetical protein -
  PSH63_RS28700 (PSH63_28695) radA 6215787..6217154 (-) 1368 WP_024077502.1 DNA repair protein RadA Machinery gene
  PSH63_RS28705 (PSH63_28700) - 6217190..6217729 (-) 540 WP_024077503.1 ankyrin repeat domain-containing protein -
  PSH63_RS28710 (PSH63_28705) katB 6217784..6219325 (-) 1542 WP_024077504.1 catalase KatB -
  PSH63_RS28715 (PSH63_28710) mscL 6219613..6220029 (+) 417 WP_017737414.1 large-conductance mechanosensitive channel protein MscL -
  PSH63_RS28720 (PSH63_28715) - 6220074..6220850 (-) 777 WP_024077505.1 ferredoxin--NADP reductase -
  PSH63_RS28725 (PSH63_28720) - 6221256..6221966 (+) 711 WP_024077506.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48819.34 Da        Isoelectric Point: 6.8987

>NTDB_id=784764 PSH63_RS28700 WP_024077502.1 6215787..6217154(-) (radA) [Pseudomonas sp. FP833]
MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGASAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPPGLQVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=784764 PSH63_RS28700 WP_024077502.1 6215787..6217154(-) (radA) [Pseudomonas sp. FP833]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAATGCACCGAGTG
CGGTGCGTGGAATACCCTCACGGAAACCATGATCGAAAGTGGCGGCGCCTCGGCCCCTACCGGCCGCGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAGACCCTGGCTGAAGTCAGTGTCGAAGAGATTCCGCGTTTCTCCACCGCGTCCGGCGAGCTG
GACCGTGTGCTCGGCGGCGGCCTGGTGGATGGTTCGGTGGTGCTGATCGGCGGCGACCCGGGCATCGGCAAGTCGACGAT
CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACGGGTGAAGAATCCCAGCAGCAAGTGG
CCATGCGCGCCCGTCGTTTGGGCCTGCCCCAGGATCAACTGCGGGTCATGACGGAAACCTGCATCGAAAGCATCATCGCC
ACGGCCCGTATCGAAAAACCCAAGGTCATGGTGATCGATTCGATCCAGACGATTTTCACCGAACAACTGCAATCGGCGCC
GGGTGGCGTGTCCCAGGTGCGCGAAAGTGCGGCGCTGCTGGTGCGTTATGCCAAGCAGAGTGGCACGGCGATCTTCCTGG
TTGGCCACGTGACCAAGGAAGGTGCATTGGCCGGGCCACGCGTGCTGGAGCATATGGTCGACACCGTGCTGTATTTCGAA
GGTGAATCCGATGGCCGCCTGCGTTTGCTGCGCGCGGTGAAGAACCGCTTTGGCGCGGTGAACGAGCTGGGTGTGTTCGC
CATGACCGACCGGGGGCTGAAAGAAGTCTCCAATCCATCGGCGATTTTTCTCACCCGTGCCCAGGAAGAAGTCCCCGGCA
GTGTGGTGATGGCGACGTGGGAAGGCACTCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCATTTGGCC
AACCCGCGTCGAGTCACCCTGGGCCTGGATCAGAACCGCCTGGCGATGTTGCTGGCGGTATTGCACCGCCATGGTGGCAT
TCCGACCCATGACCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTCAAGGTGCTGGAAACCGCATCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCGCTGCCCCATGACTTGCTGGTGTTTGGCGAAGTCGGCCTGTCGGGC
GAAGTGCGCCCGGTGCCCAGTGGCCAAGAGCGCCTCAAGGAAGCCGCCAAGCACGGCTTCAAACGCGCGATTGTGCCGAA
GGGCAATGCGCCGAAGGAAATGCCGCCAGGGTTGCAGGTGATCGGAGTAACGCGCCTGGAACAGGCATTGGATGCACTTT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.149

100

0.473
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.93

100

0.47