Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpC   Type   Regulator
Locus tag   PRK74_RS05865 Genome accession   NZ_CP117421
Coordinates   1132035..1134635 (+) Length   866 a.a.
NCBI ID   WP_000365398.1    Uniprot ID   A0A9W3L475
Organism   Bacillus cereus strain 2-6A     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context


Location: 1127035..1139635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PRK74_RS05830 (PRK74_05830) prsA 1127806..1128663 (-) 858 WP_001214202.1 peptidylprolyl isomerase PrsA -
  PRK74_RS05835 (PRK74_05835) - 1128793..1128924 (-) 132 WP_001120851.1 DUF3941 domain-containing protein -
  PRK74_RS05840 (PRK74_05840) - 1129025..1129882 (+) 858 WP_000364431.1 YitT family protein -
  PRK74_RS05845 (PRK74_05845) - 1129908..1130105 (-) 198 WP_000527407.1 DUF3813 domain-containing protein -
  PRK74_RS05850 (PRK74_05850) - 1130106..1130246 (-) 141 WP_000516816.1 hypothetical protein -
  PRK74_RS05855 (PRK74_05855) - 1130352..1131161 (-) 810 WP_001041232.1 Cof-type HAD-IIB family hydrolase -
  PRK74_RS05860 (PRK74_05860) - 1131652..1131831 (+) 180 WP_000531421.1 YjzC family protein -
  PRK74_RS05865 (PRK74_05865) clpC 1132035..1134635 (+) 2601 WP_000365398.1 ATP-dependent chaperone ClpB Regulator
  PRK74_RS05870 (PRK74_05870) - 1134675..1134857 (-) 183 WP_001211116.1 YjzD family protein -
  PRK74_RS05875 (PRK74_05875) - 1135014..1135748 (+) 735 WP_000028714.1 hydrolase -
  PRK74_RS05880 (PRK74_05880) - 1135778..1136650 (+) 873 WP_001986101.1 NAD-dependent epimerase/dehydratase family protein -
  PRK74_RS05885 (PRK74_05885) comZ 1136705..1136881 (+) 177 WP_001986215.1 ComZ family protein Regulator
  PRK74_RS05890 (PRK74_05890) fabH 1137103..1138035 (+) 933 WP_001100533.1 beta-ketoacyl-ACP synthase III -
  PRK74_RS05895 (PRK74_05895) fabF 1138067..1139305 (+) 1239 WP_000412656.1 beta-ketoacyl-ACP synthase II -

Sequence


Protein


Download         Length: 866 a.a.        Molecular weight: 97391.35 Da        Isoelectric Point: 5.1555

>NTDB_id=784714 PRK74_RS05865 WP_000365398.1 1132035..1134635(+) (clpC) [Bacillus cereus strain 2-6A]
MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLLALLEEQDGLAVRIFQKMNVDIEALKQGAESLIKKKPSVTGSGAE
VGKLYVTSALQQLLVRAGKEAEKLQDDYISVEHVLLAFSEEKGDINQLFTRLHITKDNLLQSLMTVRGNQRVTSQNPEAT
YEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKETDRGSQERLKTLQHELSDLKEVASGMRAKWEKEKEDIHKVRDLRE
HLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEG
EREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSAHLLDGLEEDGSIKEESRELVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHIT
VELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVENNELVVHVK

Nucleotide


Download         Length: 2601 bp        

>NTDB_id=784714 PRK74_RS05865 WP_000365398.1 1132035..1134635(+) (clpC) [Bacillus cereus strain 2-6A]
ATGGACTTAAATCAAATGACAACAAAAACACAAGAGGCGATTATGAGTGCCCAATCTTTAGCGGTATCTCATCATCACCA
AGAGGTGGATACTGTTCATCTATTACTTGCATTATTAGAAGAGCAAGATGGATTAGCAGTACGTATATTTCAAAAAATGA
ATGTTGATATAGAAGCATTAAAGCAAGGTGCAGAAAGTTTAATTAAAAAGAAACCTTCTGTAACGGGGAGCGGTGCAGAA
GTTGGAAAATTGTATGTAACGAGCGCTCTGCAACAACTGCTTGTAAGAGCAGGGAAAGAAGCAGAAAAACTGCAGGATGA
TTACATTTCAGTAGAACATGTATTGCTTGCTTTTTCTGAAGAAAAAGGCGATATAAATCAATTATTTACAAGATTGCATA
TTACGAAAGATAACTTATTACAGTCTTTAATGACAGTTCGGGGGAATCAAAGAGTGACTAGTCAAAATCCAGAAGCAACT
TATGAAGCGTTAGAAAAATATGGCCGTGATTTAGTGGCGGAAGTGAGAGCAGGGAAAATCGATCCTGTAATCGGCCGTGA
TAGTGAAATACGACGTGTAATCCGTATTCTTTCACGTAAAACGAAAAACAATCCGGTTTTAATTGGGGAGCCAGGTGTTG
GTAAAACAGCAATCGTTGAAGGATTAGCACAGCGTATTGTGAAAAAGGATGTACCTGAAGGATTGAAAGATAGAACGATT
TTTGCGTTAGATATGAGTGCACTCGTAGCAGGTGCGAAATTCCGTGGTGAGTTCGAAGAACGTCTGCAAGCTGTATTAAA
TGAAATTAAAAAGAGTGAAGGACGCATTTTATTATTCATTGATGAACTTCATACAATAGTTGGAGCTGGTAAAACAGAAG
GAGCCATGGATGCAGGAAATATGTTAAAACCGATGCTTGCGCGTGGTGAACTGCATTGTATCGGGGCGACGACGCTCGAT
GAATATCGCAAATATATTGAGAAAGATCCAGCGCTAGAAAGACGTTTCCAACAAGTATTAGCAGAAGAACCAACTGTTGA
AGATACAATTTCAATTTTACGTGGATTAAAAGAACGCTTTGAAATTTATCACGGTGTAAATATTCATGACCGTGCGATTG
TAGCAGCGTCAGTTTTATCAGATCGATATATTTCAGATCGATTCTTACCTGATAAAGCAATTGACCTTGTTGATGAAGCG
TGTGCAACAATTCGTACAGAAATCGATTCTATGCCAACAGAATTAGATGAAGTAACGCGCCGCATTATGCAGCTGGAAAT
TGAAGAAGCGGCTCTTGGAAAAGAAACGGATCGTGGTAGCCAAGAACGTCTAAAAACATTGCAACATGAATTATCGGATT
TAAAAGAAGTTGCAAGTGGTATGAGAGCAAAGTGGGAGAAAGAAAAAGAAGACATTCACAAAGTTCGTGACTTACGTGAA
CATTTAGAACGTCTGCGTCGTGAATTAGAAGAAGCAGAAGGCAATTACGATTTAAATAAAGCAGCCGAACTTCGTCACGG
GAAAATTCCAGCAATTGAAAAAGAGTTAAAAGAAGCGGAAGAAATGGGCGCGCATAATAAACAAGAAAATCGTTTATTAC
GTGAGGAAGTAAGTGAAGAAGAAATTGCAGATATTGTTTCACGCTGGACTGGTATTCCTGTTGCGAAACTCGTGGAAGGT
GAACGCGAGAAATTATTACGCTTAGAGCAAATCTTATCAGAGCGTGTCATCGGACAAGAGGAAGCAGTAAGCTTAGTGTC
AGACGCAGTTCTTCGTGCTCGCGCTGGTATTAAAGATCCGAACCGCCCGATTGGTTCTTTCATCTTCTTAGGACCAACAG
GTGTTGGTAAAACAGAACTTGCAAAAACGTTAGCGCAGTCTTTATTCGATAGTGAAGAGCAAATGATTCGTATCGATATG
TCTGAGTATATGGAGAAACACGCTGTGTCACGCTTAATTGGTGCGCCTCCTGGATATGTTGGGTATGAAGAGGGCGGTCA
ATTAACAGAAGCGGTAAGACGTAAACCGTATTCCGTTATTTTATTAGACGAAATCGAAAAAGCACATCCAGAAGTATTTA
ACATTTTATTACAAATGTTAGATGATGGACGCATTACAGATTCGCAAGGACGTACAGTGGACTTTAAAAACACAGTTATT
ATTATGACTTCAAATATTGGATCTGCTCATTTATTAGATGGATTAGAAGAAGATGGATCAATTAAAGAAGAATCAAGAGA
ACTTGTGATGGGACAATTAAGAGGACATTTCCGACCGGAGTTTTTAAACCGTGTCGACGAAATTATTTTATTCAAACCTC
TTACAACGAATGAAATTAAAGGCATTGTTGATAAAATTGTAAAAGAACTACAAGGTCGTCTAGCTGACCGTCACATTACA
GTAGAATTAACAGATGCAGCAAAAGAATTTGTTGTGGAAGCTGGTTTCGACCCAATGTACGGAGCTCGTCCATTAAAACG
ATACGTACAACGTCAAGTGGAAACGAAATTAGCACGAGAATTAATTGCAGGAACAATTACTGACAATAGTCACGTAGTTG
TTGATGTAGAAAATAACGAATTAGTCGTTCATGTGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Bacillus subtilis subsp. subtilis str. 168

47.771

100

0.483

  clpC Lactococcus lactis subsp. cremoris KW2

47.199

82.448

0.389