Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   Q3V61_RS03575 Genome accession   NZ_CP130536
Coordinates   763970..764941 (+) Length   323 a.a.
NCBI ID   WP_000876317.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA13-SX     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 758970..769941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V61_RS03555 nrdI 759777..760175 (+) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  Q3V61_RS03560 nrdE 760138..762243 (+) 2106 WP_303262896.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  Q3V61_RS03565 nrdF 762361..763332 (+) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  Q3V61_RS03570 - 763776..763931 (+) 156 WP_000499195.1 hypothetical protein -
  Q3V61_RS03575 ceuB 763970..764941 (+) 972 WP_000876317.1 ABC transporter permease Machinery gene
  Q3V61_RS03580 - 764928..765884 (+) 957 WP_001245572.1 iron chelate uptake ABC transporter family permease subunit -
  Q3V61_RS03585 - 765881..766642 (+) 762 WP_000616873.1 ABC transporter ATP-binding protein -
  Q3V61_RS03590 - 766761..767789 (+) 1029 WP_000754461.1 siderophore ABC transporter substrate-binding protein -
  Q3V61_RS03595 - 768106..768420 (-) 315 WP_001127269.1 CHY zinc finger protein -
  Q3V61_RS03600 murB 768438..769361 (-) 924 WP_000608440.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35654.19 Da        Isoelectric Point: 10.0154

>NTDB_id=784638 Q3V61_RS03575 WP_000876317.1 763970..764941(+) (ceuB) [Staphylococcus aureus strain SA13-SX]
MKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMEGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=784638 Q3V61_RS03575 WP_000876317.1 763970..764941(+) (ceuB) [Staphylococcus aureus strain SA13-SX]
ATGAAGTATTTATTAAAGGGAAATATTTTGCTTCTATTACTAATATTGTTGACAATTATTTCGTTGTTTATAGGTGTGAG
TGAACTATCAATTAAAGATTTACTACATTTAACTGAGTCACAGCGGAATATTTTATTCTCAAGCCGAATACCAAGGACGA
TGAGTATTTTAATTGCTGGAAGTTCGTTGGCTTTAGCAGGCTTGATAATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCGACTACAGCTGGAACGATGGAATGGGCTAAACTAGGTATTTTAATTGCTTTATTGTTCTTTCCAACCGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGTATTTGCGGTACGTTTTTATTTGTTAAAATCATTGATTTTATAAAAGTGA
AAGATGTCATTTTTGTGCCGCTTTTAGGAATTATGATGGAGGGGATTGTTGCAAGTTTCACAACCTTCATCTCATTGCGC
ACGAATGCTGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGCTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCTAATCATTTCACGATTGTAGGAATGGGTAAAGACTTTACTA
ATAATTTAGGTTTGAGTTACGAAAAATTAATTAACATCGCATTGTTTATTACTGCAACTATTACAGCATTAGTAGTAGTG
ACTGTTGGAACATTACCGTTCTTAGGACTAGTAATACCAAATATTATTTCAATTTATCGAGGTGATCATTTGAAAAATGC
TATCCCTCATACGATGATGTTAGGTGCCATCTTTGTATTATTTTCTGATATAGTTGGCAGAATTGTTGTTTATCCATATG
AAATAAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTGCTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.188

99.071

0.467