Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   Q3V74_RS03570 Genome accession   NZ_CP130531
Coordinates   759891..760973 (+) Length   360 a.a.
NCBI ID   WP_303262846.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA16-SX     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 754891..765973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V74_RS03550 - 755261..756331 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  Q3V74_RS03555 - 756649..757704 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  Q3V74_RS03560 - 757876..758517 (-) 642 WP_000192947.1 YigZ family protein -
  Q3V74_RS03565 fakB1 758661..759527 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  Q3V74_RS03570 comFA 759891..760973 (+) 1083 WP_303262846.1 DEAD/DEAH box helicase Machinery gene
  Q3V74_RS03575 - 760966..761640 (+) 675 WP_001057968.1 ComF family protein -
  Q3V74_RS03580 raiA 761701..762273 (+) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  Q3V74_RS03585 secA 762687..765224 (+) 2538 WP_000506542.1 preprotein translocase subunit SecA -
  Q3V74_RS03590 - 765266..765364 (+) 99 WP_031844945.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42087.66 Da        Isoelectric Point: 9.8309

>NTDB_id=784369 Q3V74_RS03570 WP_303262846.1 759891..760973(+) (comFA) [Staphylococcus aureus strain SA16-SX]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKHAFLNEDIDILHQQSSQQFEGHFVVCTMHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINKQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=784369 Q3V74_RS03570 WP_303262846.1 759891..760973(+) (comFA) [Staphylococcus aureus strain SA16-SX]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGCTCGCAAAGTTCATCGCAAGCATATTATCATCTCTCATTTGAATT
GTCAGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAACACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAATGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTTTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAAACAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(214-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367