Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   JLD64_RS19380 Genome accession   NZ_AP022508
Coordinates   4092740..4094173 (+) Length   477 a.a.
NCBI ID   WP_028014571.1    Uniprot ID   A0AAU7N964
Organism   Enterobacter bugandensis strain STN0717-56     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4087740..4099173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLD64_RS19350 (STN0717ENT56_37390) - 4088307..4089284 (+) 978 WP_028014566.1 calcium/sodium antiporter -
  JLD64_RS19355 (STN0717ENT56_37400) kdsD 4089298..4090284 (+) 987 WP_028014567.1 arabinose-5-phosphate isomerase KdsD -
  JLD64_RS19360 (STN0717ENT56_37410) kdsC 4090299..4090865 (+) 567 WP_025756695.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  JLD64_RS19365 (STN0717ENT56_37420) lptC 4090862..4091437 (+) 576 WP_028014568.1 LPS export ABC transporter periplasmic protein LptC -
  JLD64_RS19370 (STN0717ENT56_37430) lptA 4091406..4091960 (+) 555 WP_028014569.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  JLD64_RS19375 (STN0717ENT56_37440) lptB 4091967..4092692 (+) 726 WP_028014570.1 LPS export ABC transporter ATP-binding protein -
  JLD64_RS19380 (STN0717ENT56_37450) rpoN/rpoN1 4092740..4094173 (+) 1434 WP_028014571.1 RNA polymerase factor sigma-54 Machinery gene
  JLD64_RS19385 (STN0717ENT56_37460) hpf 4094196..4094483 (+) 288 WP_014171818.1 ribosome hibernation promoting factor -
  JLD64_RS19390 (STN0717ENT56_37470) ptsN 4094566..4095057 (+) 492 WP_008501443.1 PTS IIA-like nitrogen regulatory protein PtsN -
  JLD64_RS19395 (STN0717ENT56_37480) rapZ 4095103..4095957 (+) 855 WP_014885397.1 RNase adapter RapZ -
  JLD64_RS19400 (STN0717ENT56_37490) npr 4095954..4096226 (+) 273 WP_025756690.1 PTS phosphocarrier protein NPr -
  JLD64_RS19405 (STN0717ENT56_37500) mtgA 4096265..4096990 (-) 726 WP_199886775.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  JLD64_RS19410 (STN0717ENT56_37510) elbB 4096987..4097640 (-) 654 WP_047364720.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54181.95 Da        Isoelectric Point: 4.3173

>NTDB_id=78379 JLD64_RS19380 WP_028014571.1 4092740..4094173(+) (rpoN/rpoN1) [Enterobacter bugandensis strain STN0717-56]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQADLHDEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESMGDEEIEIEEIEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWLDEARLIISDHLDLLANHDFRTLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNDRWVVELNSDSIPRLQINQQYASMCTSARNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=78379 JLD64_RS19380 WP_028014571.1 4092740..4094173(+) (rpoN/rpoN1) [Enterobacter bugandensis strain STN0717-56]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAGCTGGCGATGACGCCGCAGTTACAGCAGGCAATTCGTCTGTTGCA
ACTGTCCACCTTAGAACTCCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAATCCCCTGCTGGAGCAAGCCGATCTTCATG
ACGAGGTAGATACCCAGCAGTCACAGGACACAGAAGCGCTCGACACCGCGGATGCACTCGAACAAAAAGAGATGCCGGAC
GAGCTTCCGCTGGATGCCAGCTGGGATGAAATCTATACCGCCGGGACCCCTTCCGGCACGCGTGCAGACTACCAGGACGA
CGAGCTACCGGTCTACCAGGGCGAAACCACCCAGTCGCTGCAGGATTACCTGATGTGGCAGGTAGAGCTTACCCCCTTCT
CCGATACTGACCGCGCTATTGCCACGTCGATTGTCGACGCCGTTGATGACACCGGTTATTTGACCGTCACGCTGGACGAC
ATTCTGGAAAGCATGGGCGATGAAGAGATTGAGATTGAGGAGATTGAAGCGGTACTGAAACGCATTCAGCGCTTCGATCC
GGTCGGGGTGGCCGCGAAGGACCTGCGCGACTGTCTGCTGATCCAGCTTTCTCAGTTCAGCAAAGAGACGCCGTGGCTCG
ACGAGGCACGCTTAATCATCAGCGATCATCTGGATCTTCTGGCTAACCACGATTTCCGCACCCTGATGCGCGTCACGCGC
CTGAAGGAAGAGGTGCTGAAAGAGGCGGTAAATCTGATTCAGTCCCTCGATCCGCGTCCCGGTCAGTCGATCCAGACCAG
CGAACCCGAGTACGTTATCCCGGACGTGCTGGTCAGAAAACACAATGACCGCTGGGTCGTTGAACTGAACTCTGACAGCA
TCCCTCGCCTGCAAATCAACCAGCAGTACGCCTCCATGTGTACCAGCGCGCGCAACGACTCTGACAATCAATATATTCGC
AGCAATCTTCAGGAAGCGCGATGGTTGATCAAGAGCCTGGAGAGCCGGAATGATACCCTGCTTCGCGTGAGCCGCTGCAT
CGTCGAACAGCAGCAGGCCTTCTTTGAGCAGGGCGAAGAGTATATGAAGCCGATGGTGCTGGCGGATATCGCCCAGGCCG
TCGAGATGCATGAATCCACTATTTCCCGCGTTACTACGCAGAAGTATCTGCACAGTCCGCGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCACGTGAACACCGAGGGTGGCGGCGAAGCCTCCTCAACGGCGATTCGCGCCCTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTAAGTGACAGTAAGTTGACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.347

100

0.48

Multiple sequence alignment