Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PQP99_RS12845 Genome accession   NZ_CP117312
Coordinates   2685000..2685605 (+) Length   201 a.a.
NCBI ID   WP_023231422.1    Uniprot ID   A0A3V7EYX1
Organism   Salmonella enterica subsp. enterica serovar Derby strain RM003     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2680000..2690605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQP99_RS12825 (PQP99_12825) - 2680395..2682155 (-) 1761 WP_000156448.1 Lon protease family protein -
  PQP99_RS12830 (PQP99_12830) matP 2682341..2682793 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  PQP99_RS12835 (PQP99_12835) ompA 2682865..2683917 (-) 1053 WP_001670727.1 porin OmpA -
  PQP99_RS12840 (PQP99_12840) sulA 2684274..2684783 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  PQP99_RS12845 (PQP99_12845) sxy/tfoX 2685000..2685605 (+) 606 WP_023231422.1 TfoX/Sxy family DNA transformation protein Regulator
  PQP99_RS12850 (PQP99_12850) yccS 2685592..2687745 (-) 2154 WP_000950881.1 YccS family putative transporter -
  PQP99_RS12855 (PQP99_12855) - 2687764..2688210 (-) 447 WP_001261222.1 YccF domain-containing protein -
  PQP99_RS12860 (PQP99_12860) helD 2688334..2690388 (+) 2055 WP_023231792.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23202.99 Da        Isoelectric Point: 8.7403

>NTDB_id=783762 PQP99_RS12845 WP_023231422.1 2685000..2685605(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Derby strain RM003]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYVLEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=783762 PQP99_RS12845 WP_023231422.1 2685000..2685605(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Derby strain RM003]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAGTGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGTCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3V7EYX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751