Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PQQ01_RS13850 Genome accession   NZ_CP117307
Coordinates   2836812..2837417 (-) Length   201 a.a.
NCBI ID   WP_023231422.1    Uniprot ID   A0A3V7EYX1
Organism   Salmonella enterica subsp. enterica serovar Derby strain RM004     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2831812..2842417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQQ01_RS13835 (PQQ01_13835) helD 2832029..2834083 (-) 2055 WP_023231792.1 DNA helicase IV -
  PQQ01_RS13840 (PQQ01_13840) - 2834207..2834653 (+) 447 WP_001261222.1 YccF domain-containing protein -
  PQQ01_RS13845 (PQQ01_13845) yccS 2834672..2836825 (+) 2154 WP_000950881.1 YccS family putative transporter -
  PQQ01_RS13850 (PQQ01_13850) sxy/tfoX 2836812..2837417 (-) 606 WP_023231422.1 TfoX/Sxy family DNA transformation protein Regulator
  PQQ01_RS13855 (PQQ01_13855) sulA 2837634..2838143 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  PQQ01_RS13860 (PQQ01_13860) ompA 2838500..2839552 (+) 1053 WP_001670727.1 porin OmpA -
  PQQ01_RS13865 (PQQ01_13865) matP 2839624..2840076 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  PQQ01_RS13870 (PQQ01_13870) - 2840262..2842022 (+) 1761 WP_000156448.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23202.99 Da        Isoelectric Point: 8.7403

>NTDB_id=783742 PQQ01_RS13850 WP_023231422.1 2836812..2837417(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Derby strain RM004]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYVLEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=783742 PQQ01_RS13850 WP_023231422.1 2836812..2837417(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Derby strain RM004]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAGTGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGTCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3V7EYX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751