Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PQP83_RS08765 Genome accession   NZ_CP117301
Coordinates   1840048..1840653 (+) Length   201 a.a.
NCBI ID   WP_023231422.1    Uniprot ID   A0A3V7EYX1
Organism   Salmonella enterica subsp. enterica serovar Derby strain RM006     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1835048..1845653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQP83_RS08745 (PQP83_08745) - 1835443..1837203 (-) 1761 WP_000156448.1 Lon protease family protein -
  PQP83_RS08750 (PQP83_08750) matP 1837389..1837841 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  PQP83_RS08755 (PQP83_08755) ompA 1837913..1838965 (-) 1053 WP_001670727.1 porin OmpA -
  PQP83_RS08760 (PQP83_08760) sulA 1839322..1839831 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  PQP83_RS08765 (PQP83_08765) sxy/tfoX 1840048..1840653 (+) 606 WP_023231422.1 TfoX/Sxy family DNA transformation protein Regulator
  PQP83_RS08770 (PQP83_08770) yccS 1840640..1842793 (-) 2154 WP_000950881.1 YccS family putative transporter -
  PQP83_RS08775 (PQP83_08775) - 1842812..1843258 (-) 447 WP_001261222.1 YccF domain-containing protein -
  PQP83_RS08780 (PQP83_08780) helD 1843382..1845436 (+) 2055 WP_023231792.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23202.99 Da        Isoelectric Point: 8.7403

>NTDB_id=783695 PQP83_RS08765 WP_023231422.1 1840048..1840653(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Derby strain RM006]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYVLEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=783695 PQP83_RS08765 WP_023231422.1 1840048..1840653(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Derby strain RM006]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAGTGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGTCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3V7EYX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751