Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JLD64_RS07760 Genome accession   NZ_AP022508
Coordinates   1650968..1651594 (+) Length   208 a.a.
NCBI ID   WP_088204954.1    Uniprot ID   -
Organism   Enterobacter bugandensis strain STN0717-56     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1645968..1656594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLD64_RS07740 (STN0717ENT56_14860) - 1646369..1648129 (-) 1761 WP_150143256.1 AAA family ATPase -
  JLD64_RS07745 (STN0717ENT56_14870) matP 1648315..1648767 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  JLD64_RS07750 (STN0717ENT56_14880) ompA 1648831..1649886 (-) 1056 WP_108780329.1 porin OmpA -
  JLD64_RS07755 (STN0717ENT56_14890) sulA 1650241..1650750 (-) 510 WP_041910604.1 SOS-induced cell division inhibitor SulA -
  JLD64_RS07760 (STN0717ENT56_14900) sxy/tfoX 1650968..1651594 (+) 627 WP_088204954.1 TfoX/Sxy family DNA transformation protein Regulator
  JLD64_RS07765 (STN0717ENT56_14910) yccS 1651551..1653713 (-) 2163 WP_041910602.1 YccS family putative transporter -
  JLD64_RS07770 (STN0717ENT56_14920) - 1653733..1654179 (-) 447 WP_041910601.1 YccF domain-containing protein -
  JLD64_RS07775 (STN0717ENT56_14930) helD 1654303..1656357 (+) 2055 WP_193030951.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24002.64 Da        Isoelectric Point: 9.2151

>NTDB_id=78367 JLD64_RS07760 WP_088204954.1 1650968..1651594(+) (sxy/tfoX) [Enterobacter bugandensis strain STN0717-56]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSEGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDEGLWQDRERLLQLSTFALNAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARESWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPLENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=78367 JLD64_RS07760 WP_088204954.1 1650968..1651594(+) (sxy/tfoX) [Enterobacter bugandensis strain STN0717-56]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTGTCACCACTGGGTGAAATTCATCATCGCGCGCT
GTTCGGCGGCTATACCCTGGCAGTGGATGATGCGGTTTTTGCCATGGTGTCAGAAGGTGAGCTCTACCTCCGTGCCTGTG
AAGAAAGTGCGAAATACTGTGTGAAAAATGCCGCGTCTTTTTTGACCCTGATGAAGCGGGGCCGTCCGGTGCTTCTCAAC
TATTACCGGGTGGATGAGGGGCTATGGCAGGACAGGGAGCGTCTGCTTCAGCTCTCCACTTTCGCACTTAATGCGGCAAG
AAAAGAGCGTTACCAGCGGCATCAGCGCAATCGACTTAAGGACCTGCCAAACCTGACCTTTCAGCTGGAAGTGTTGCTCT
TTGAAGCGGGCATCACCAACGAAGAAACACTGCGGGCGCTTGGCGCAAGGGAGAGCTGGCTGAAGATGCGGGCGAAAAAT
AAAGCGCTGAGTATCAAAGTGCTATTCGCGCTGGAAGGGGCGATCGAGGGGCTGCATGAGGCGGCACTCCCGGCCGGCAT
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACTGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.586

95.192

0.558

Multiple sequence alignment