Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   Q3V64_RS09955 Genome accession   NZ_CP130517
Coordinates   2013491..2014462 (-) Length   323 a.a.
NCBI ID   WP_031775063.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA26-SX     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2008491..2019462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V64_RS09930 murB 2009071..2009994 (+) 924 WP_000608440.1 UDP-N-acetylmuramate dehydrogenase -
  Q3V64_RS09935 - 2010012..2010326 (+) 315 WP_001127269.1 CHY zinc finger protein -
  Q3V64_RS09940 - 2010643..2011671 (-) 1029 WP_000754443.1 siderophore ABC transporter substrate-binding protein -
  Q3V64_RS09945 - 2011790..2012551 (-) 762 WP_000616842.1 ABC transporter ATP-binding protein -
  Q3V64_RS09950 - 2012548..2013504 (-) 957 WP_001245577.1 iron chelate uptake ABC transporter family permease subunit -
  Q3V64_RS09955 ceuB 2013491..2014462 (-) 972 WP_031775063.1 ABC transporter permease Machinery gene
  Q3V64_RS09960 - 2014501..2014656 (-) 156 Protein_1933 hypothetical protein -
  Q3V64_RS09965 nrdF 2015170..2016141 (-) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  Q3V64_RS09970 nrdE 2016259..2018364 (-) 2106 WP_303074164.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  Q3V64_RS09975 nrdI 2018327..2018725 (-) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35610.18 Da        Isoelectric Point: 10.1194

>NTDB_id=783525 Q3V64_RS09955 WP_031775063.1 2013491..2014462(-) (ceuB) [Staphylococcus aureus strain SA26-SX]
MKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALVGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=783525 Q3V64_RS09955 WP_031775063.1 2013491..2014462(-) (ceuB) [Staphylococcus aureus strain SA26-SX]
ATGAAGTATTTATTAAAGGGAAATATTTTGCTTCTATTACTAATATTGTTGACAATTATTTCGTTGTTCATAGGTGTGAG
TGAACTATCAATTAAAGATTTACTACATTTAACTGAGTCACAGCGGAATATTTTATTCTCAAGCCGAATACCAAGGACGA
TGAGTATTTTAATTGCTGGAAGTTCGTTGGCTTTAGTAGGCTTGATAATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCGACTACAGCTGGAACGATGGAATGGGCTAAACTAGGTATTTTAATTGCTTTATTGTTCTTTCCAACCGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGTATTTGCGGTACGTTTTTATTTGTTAAAATCATTGATTTTATAAAAGTGA
AAGATGTCATTTTTGTACCGCTTTTAGGAATTATGATGGGTGGGATTGTTGCAAGTTTCACAACCTTCATCTCATTGCGC
ACGAATGCTGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGCTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCTAATCATTTCACGATTGTAGGAATGGGTAAAGACTTTACTA
ATAATTTAGGTTTGAGTTACGAAAAATTAATTAACATCGCATTGTTTATTACTGCAACTATTACAGCATTGGTAGTGGTG
ACTGTTGGAACATTACCGTTCTTAGGACTAGTAATACCAAATATTATTTCAATTTATCGAGGTGATCATTTGAAAAATGC
TATCCCTCATACGATGATGTTAGGTGCCATCTTTGTATTATTTTCTGATATAGTTGGCAGAATTGTTGTTTATCCATATG
AAATAAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTGCTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.5

99.071

0.471