Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   MGCS35823_RS07965 Genome accession   NZ_CP117289
Coordinates   1582344..1583381 (-) Length   345 a.a.
NCBI ID   WP_065957291.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain MGCS35823     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1577344..1588381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGCS35823_RS07940 (MGCS35823_03248) rbsC 1577366..1578307 (-) 942 WP_022554979.1 hypothetical protein -
  MGCS35823_RS07945 (MGCS35823_03250) - 1578309..1579787 (-) 1479 WP_084916587.1 sugar ABC transporter ATP-binding protein -
  MGCS35823_RS07950 (MGCS35823_03252) rbsD 1579803..1580201 (-) 399 WP_003051896.1 D-ribose pyranase -
  MGCS35823_RS07955 (MGCS35823_03254) rbsK 1580176..1581087 (-) 912 WP_003061715.1 ribokinase -
  MGCS35823_RS07960 (MGCS35823_03256) - 1581080..1582063 (-) 984 WP_003053684.1 LacI family DNA-binding transcriptional regulator -
  MGCS35823_RS07965 (MGCS35823_03258) sepM 1582344..1583381 (-) 1038 WP_065957291.1 SepM family pheromone-processing serine protease Regulator
  MGCS35823_RS07970 (MGCS35823_03260) coaD 1583368..1583859 (-) 492 WP_065957290.1 pantetheine-phosphate adenylyltransferase -
  MGCS35823_RS07975 (MGCS35823_03262) rsmD 1583849..1584388 (-) 540 WP_014612463.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  MGCS35823_RS07980 (MGCS35823_03264) asnA 1584623..1585615 (-) 993 WP_003061055.1 aspartate--ammonia ligase -
  MGCS35823_RS07985 (MGCS35823_03266) arcC 1585942..1586892 (-) 951 WP_046178063.1 carbamate kinase -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37617.20 Da        Isoelectric Point: 9.4270

>NTDB_id=783453 MGCS35823_RS07965 WP_065957291.1 1582344..1583381(-) (sepM) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS35823]
MKTIKKIKWWLISLIALVALLIVLFFPLPYYVEMPGGAYDIRTVVKVNGKEDKDKGSYQFVAVSLSRASLAQLLYAWLTP
FTEISSVEDTTGGYSDADYIRINQFYMETSQNAAVYQALTLADKPVTLDYKGVYVLDISKDSTFKGTLNLADTVTGVNHK
QFTSSTELVDYVSHLKLGDKVTVQFISNSEPKSETGRIIKLKNGKNGIGIALTDHTKVNSAEKIEFSTQGVGGPSAGLMF
TLDIYDQINKEDLRKGRHIAGTGTIGKDGEVGDIGGAGLKVVAAADAGAEIFFVPNNPVDKAVKKANPKAISNYEEAKRA
AKQLKTKMKIVPVTTVQDALAYLRQ

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=783453 MGCS35823_RS07965 WP_065957291.1 1582344..1583381(-) (sepM) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS35823]
ATGAAAACAATTAAAAAAATTAAATGGTGGCTGATTAGCCTAATTGCCCTCGTGGCTCTGCTTATCGTCCTTTTTTTCCC
TCTTCCTTATTATGTTGAAATGCCTGGCGGAGCCTATGACATTCGAACTGTGGTCAAGGTTAATGGCAAAGAAGATAAAG
ATAAAGGCTCCTATCAGTTTGTGGCAGTCAGTCTCAGTCGAGCCAGTTTAGCTCAGTTGCTCTATGCTTGGCTAACCCCT
TTTACTGAAATCAGTTCAGTTGAGGATACCACAGGCGGTTATAGCGATGCAGACTATATCCGCATTAATCAATTCTACAT
GGAAACCTCACAAAATGCTGCGGTCTATCAGGCATTGACCTTGGCAGACAAACCAGTTACTTTGGACTACAAAGGGGTAT
ATGTGTTAGATATTAGCAAGGATTCAACCTTTAAAGGTACTTTAAACTTAGCAGATACGGTAACGGGAGTGAATCACAAA
CAATTTACGAGTTCAACAGAACTTGTGGACTATGTCTCTCATTTAAAACTTGGTGATAAGGTGACTGTGCAGTTTATTAG
TAATAGCGAACCTAAGTCTGAAACAGGTCGTATCATCAAACTAAAAAATGGTAAAAATGGTATCGGCATTGCTTTAACAG
ACCATACTAAAGTCAATTCAGCAGAGAAAATCGAGTTTAGTACCCAAGGTGTTGGGGGTCCTAGCGCAGGCTTAATGTTT
ACATTAGATATCTACGACCAAATTAATAAAGAAGACCTTCGTAAAGGAAGACATATCGCCGGGACAGGAACCATTGGTAA
AGATGGTGAAGTTGGAGATATTGGCGGTGCGGGTCTTAAGGTCGTTGCTGCTGCAGATGCTGGTGCTGAGATTTTCTTTG
TGCCGAATAATCCTGTGGATAAAGCTGTTAAAAAAGCCAATCCAAAAGCTATTAGCAATTATGAAGAGGCCAAGCGAGCA
GCCAAGCAGTTAAAAACAAAAATGAAAATTGTTCCTGTAACAACTGTTCAGGATGCCCTAGCCTACCTTCGTCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

71.304

100

0.713