Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   Q3V60_RS10420 Genome accession   NZ_CP130516
Coordinates   2069940..2070647 (+) Length   235 a.a.
NCBI ID   WP_000094093.1    Uniprot ID   A0A1D4DWM6
Organism   Staphylococcus aureus strain SA27-SX     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2064940..2075647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V60_RS10365 - 2065689..2065952 (-) 264 WP_001205732.1 hypothetical protein -
  Q3V60_RS10370 - 2065961..2066221 (-) 261 WP_000291488.1 DUF1108 family protein -
  Q3V60_RS10375 - 2066314..2066475 (-) 162 WP_000066020.1 DUF1270 domain-containing protein -
  Q3V60_RS10380 - 2066472..2066792 (-) 321 WP_001120197.1 DUF771 domain-containing protein -
  Q3V60_RS10385 - 2066851..2067483 (+) 633 WP_000275058.1 hypothetical protein -
  Q3V60_RS10390 - 2067498..2067638 (-) 141 WP_000939496.1 hypothetical protein -
  Q3V60_RS10395 - 2067669..2067866 (-) 198 WP_001148861.1 hypothetical protein -
  Q3V60_RS10400 - 2067882..2068637 (-) 756 WP_001148343.1 phage antirepressor KilAC domain-containing protein -
  Q3V60_RS10405 - 2068694..2069233 (+) 540 WP_000351243.1 hypothetical protein -
  Q3V60_RS10410 - 2069257..2069517 (-) 261 WP_000435341.1 transcriptional regulator -
  Q3V60_RS10415 - 2069530..2069769 (-) 240 WP_000548576.1 helix-turn-helix transcriptional regulator -
  Q3V60_RS10420 irvR 2069940..2070647 (+) 708 WP_000094093.1 XRE family transcriptional regulator Regulator
  Q3V60_RS10425 - 2070659..2070805 (+) 147 WP_001049401.1 hypothetical protein -
  Q3V60_RS10430 - 2070802..2070987 (+) 186 WP_000109192.1 hypothetical protein -
  Q3V60_RS10435 - 2071187..2071369 (+) 183 WP_000705240.1 hypothetical protein -
  Q3V60_RS10440 - 2071447..2072160 (+) 714 WP_001549185.1 type II toxin-antitoxin system PemK/MazF family toxin -
  Q3V60_RS10445 - 2072352..2073389 (+) 1038 WP_000857185.1 site-specific integrase -
  Q3V60_RS10450 sph 2073440..2074270 (+) 831 Protein_2023 sphingomyelin phosphodiesterase -
  Q3V60_RS10455 lukG 2074508..2075524 (-) 1017 WP_000595401.1 bi-component leukocidin LukGH subunit G -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26769.35 Da        Isoelectric Point: 5.4082

>NTDB_id=783437 Q3V60_RS10420 WP_000094093.1 2069940..2070647(+) (irvR) [Staphylococcus aureus strain SA27-SX]
MSSFSSNLERLMNKRDMSDSELAELVDVNRTTVTRWRKGIRSPKLDKLPEIANVFGVKPLDLIHDMDDSKIIEEIHNVSS
QLTPPRQSNVLKYATNQLEEQNNDSDNLVDFNSYIQEKSEVDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVNG
DSMEPLFKNGQIIFIEKSHTIKDGQIGVFIINGDAYVKKVYVEDNRLTLVSLNKKYKDLHFYDNESVRLVGKVIL

Nucleotide


Download         Length: 708 bp        

>NTDB_id=783437 Q3V60_RS10420 WP_000094093.1 2069940..2070647(+) (irvR) [Staphylococcus aureus strain SA27-SX]
ATGAGTTCATTTTCTTCGAATCTAGAACGTCTGATGAACAAAAGAGATATGAGTGATAGTGAATTAGCAGAATTAGTAGA
TGTAAATAGAACAACAGTCACAAGATGGAGAAAGGGAATTAGAAGTCCAAAACTAGATAAATTACCTGAAATAGCTAATG
TTTTTGGAGTTAAACCCTTAGATTTAATACATGATATGGATGATTCGAAAATTATTGAAGAAATTCATAACGTGTCATCT
CAACTCACGCCTCCAAGACAAAGCAATGTACTAAAATATGCGACTAATCAATTAGAAGAGCAAAATAATGACAGTGATAA
TCTGGTAGATTTCAATTCTTACATTCAAGAAAAATCCGAAGTGGATATATATGGTTGTGCGTCTGCTGGTATTGGTGAAA
GATTATATAACGAGCCTATTTCAAAAGAATTCGTAAGAGGTTATGTCCCCGCACATGATATAGCTTTAAAAGTAAATGGA
GACTCAATGGAGCCGTTATTTAAAAATGGACAAATTATATTCATTGAAAAATCTCACACTATCAAAGATGGACAAATAGG
CGTCTTTATTATAAATGGAGATGCTTACGTAAAGAAGGTTTATGTAGAAGATAACAGATTAACGTTGGTTTCTTTAAATA
AAAAGTATAAAGATTTACATTTTTATGATAATGAAAGTGTGAGGTTAGTTGGAAAAGTTATTTTATAG

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(123-234)

Helix-turn-helix (HTH_3)

(8-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D4DWM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

30.769

100

0.374