Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   Q3V60_RS06195 Genome accession   NZ_CP130516
Coordinates   1269808..1270959 (+) Length   383 a.a.
NCBI ID   WP_000020360.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA27-SX     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1264808..1275959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V60_RS06170 - 1265637..1266923 (+) 1287 WP_000664769.1 pitrilysin family protein -
  Q3V60_RS06175 - 1266923..1267627 (+) 705 WP_000646237.1 SDR family NAD(P)-dependent oxidoreductase -
  Q3V60_RS06180 - 1267732..1268559 (+) 828 WP_000214890.1 YmfK family protein -
  Q3V60_RS06185 - 1268578..1268970 (+) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  Q3V60_RS06190 pgsA 1269004..1269582 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  Q3V60_RS06195 cinA 1269808..1270959 (+) 1152 WP_000020360.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  Q3V60_RS06200 recA 1271124..1272167 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  Q3V60_RS06205 rny 1272521..1274080 (+) 1560 WP_001050913.1 ribonuclease Y -
  Q3V60_RS06210 - 1274377..1274592 (-) 216 WP_077156059.1 hypothetical protein -
  Q3V60_RS06215 - 1274766..1275563 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43211.48 Da        Isoelectric Point: 5.9365

>NTDB_id=783395 Q3V60_RS06195 WP_000020360.1 1269808..1270959(+) (cinA) [Staphylococcus aureus strain SA27-SX]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLTNHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINDNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=783395 Q3V60_RS06195 WP_000020360.1 1269808..1270959(+) (cinA) [Staphylococcus aureus strain SA27-SX]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAACAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACGATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.146

100

0.431