Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   Q3V80_RS04290 Genome accession   NZ_CP130515
Coordinates   912539..913525 (+) Length   328 a.a.
NCBI ID   WP_303061714.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA28-SX     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 907539..918525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V80_RS04275 - 907948..908889 (+) 942 WP_000786752.1 ABC transporter ATP-binding protein -
  Q3V80_RS04280 - 908907..910562 (+) 1656 WP_000197013.1 peptide ABC transporter substrate-binding protein -
  Q3V80_RS04285 opp4A 910773..912488 (+) 1716 WP_000517164.1 oligopeptide ABC transporter substrate-binding protein -
  Q3V80_RS04290 amiE 912539..913525 (+) 987 WP_303061714.1 ABC transporter ATP-binding protein Regulator
  Q3V80_RS04295 - 913528..914508 (+) 981 WP_229346845.1 ABC transporter ATP-binding protein -
  Q3V80_RS04300 opp4B 914501..915463 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  Q3V80_RS04305 opp4C 915475..916356 (+) 882 WP_001180267.1 oligopeptide ABC transporter permease -
  Q3V80_RS04310 - 916823..917332 (+) 510 Protein_837 transposase -
  Q3V80_RS04315 trpS 917358..918347 (-) 990 WP_000448941.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 36980.46 Da        Isoelectric Point: 8.2956

>NTDB_id=783294 Q3V80_RS04290 WP_303061714.1 912539..913525(+) (amiE) [Staphylococcus aureus strain SA28-SX]
MNNVLLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLSSGEVIFDGKRIDT
LNEKQLLDIRGNDIAMIFQEPMTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIARQDEILNSYPHQLSGG
MRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGG
IKEILHNPKHPYTQKLLSTIPKLKEEQKRLETIEGIVPSIQAFHVNKCRFANRCNKKMDICNNKSPKMHVCEDVIVRCHL
YKNEYKEI

Nucleotide


Download         Length: 987 bp        

>NTDB_id=783294 Q3V80_RS04290 WP_303061714.1 912539..913525(+) (amiE) [Staphylococcus aureus strain SA28-SX]
ATGAATAATGTATTGTTAGAGGTTAAAGATTTAGAAACATCATTAAAAATAAATAATGAATGGTTAGCAACTGTTGAAAA
TATTTCTTTTGAATTATCTAAAGGAGAAGTTTTGGGTATAGTAGGGGAATCTGGTTGCGGTAAGTCCATATTAAGTAAGT
CAATTATTAAATTATTACCAGAAAAGATATCTAAACTAAGTAGTGGAGAAGTTATATTTGATGGTAAACGAATCGATACG
CTCAATGAGAAGCAATTGCTAGATATTCGAGGAAATGATATTGCTATGATTTTTCAAGAACCTATGACTGCTTTAAATCC
TGTATTTACCATAAAAAATCAACTTGTGGAATCTATAAAATCACATAAAAAAATTTCTAAAAAAGAAGCAAATAACTTAG
CAAAAGATTTACTAAAAAAAGTTGGAATTGCTAGACAAGATGAAATATTAAATAGCTATCCTCATCAATTATCTGGTGGT
ATGAGACAAAGAGTAATGATTGCAATGGCCATTTCATGTTCTCCTAAATTATTAATTGCTGATGAACCTACAACAGCATT
GGATGTCACGATTCAAGCGCAAATATTAGACTTATTAAAAGAATTGCAAAAGGAAACGCAAATGGCAATTATGATGATTA
CACATGATTTGAGTGTAGTTGCTGAGTTTTGCGATAAAGTCTTAGTTATGTATGCAGGTCAAATTGTAGAATTTGGAGGC
ATAAAAGAAATACTACACAATCCGAAACATCCTTATACCCAAAAATTATTATCAACAATTCCAAAACTTAAAGAAGAGCA
GAAACGACTTGAAACGATAGAAGGAATTGTGCCATCAATCCAAGCATTTCACGTTAATAAGTGCAGATTTGCAAATAGAT
GTAACAAAAAAATGGATATTTGTAATAATAAATCTCCTAAAATGCATGTTTGTGAAGACGTCATTGTACGTTGTCATTTG
TACAAAAATGAATATAAGGAGATATAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(236-301)

ABC transporter (ABC_tran)

(26-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

45.192

95.122

0.43
  amiE Streptococcus thermophilus LMG 18311

44.551

95.122

0.424
  amiE Streptococcus thermophilus LMD-9

44.551

95.122

0.424
  oppD Streptococcus mutans UA159

44.66

94.207

0.421