Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   Q3V79_RS04790 Genome accession   NZ_CP130513
Coordinates   980565..981551 (+) Length   328 a.a.
NCBI ID   WP_001067042.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA29-SX     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 975565..986551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V79_RS04775 - 975972..976913 (+) 942 WP_000786736.1 ABC transporter ATP-binding protein -
  Q3V79_RS04780 - 976932..978587 (+) 1656 WP_000197023.1 peptide ABC transporter substrate-binding protein -
  Q3V79_RS04785 opp4A 978799..980514 (+) 1716 WP_000517176.1 oligopeptide ABC transporter substrate-binding protein -
  Q3V79_RS04790 amiE 980565..981551 (+) 987 WP_001067042.1 ABC transporter ATP-binding protein Regulator
  Q3V79_RS04795 - 981554..982534 (+) 981 WP_000427769.1 ABC transporter ATP-binding protein -
  Q3V79_RS04800 opp4B 982527..983489 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  Q3V79_RS04805 opp4C 983502..984383 (+) 882 WP_001180274.1 oligopeptide ABC transporter permease -
  Q3V79_RS04810 trpS 984425..985414 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  Q3V79_RS04815 spxA 985709..986104 (+) 396 WP_000258003.1 transcriptional regulator SpxA -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 37007.44 Da        Isoelectric Point: 8.1005

>NTDB_id=783202 Q3V79_RS04790 WP_001067042.1 980565..981551(+) (amiE) [Staphylococcus aureus strain SA29-SX]
MNNVLLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLSNGEVIFDGKRIDT
LNEKQLLDIRGNDIAMIFQEPMTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIARQDEILNSYPHQLSGG
MRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGG
IKEILHNPKHPYTQKLLSTIPKLKEEQKRLETIEGIVPSIQAFHVNKCRFANRCNKKMDICNNQSPKMHVCEDVIVRCHL
YKNEYKEI

Nucleotide


Download         Length: 987 bp        

>NTDB_id=783202 Q3V79_RS04790 WP_001067042.1 980565..981551(+) (amiE) [Staphylococcus aureus strain SA29-SX]
ATGAATAATGTATTGTTAGAGGTTAAAGATTTAGAAACATCATTAAAAATAAATAATGAATGGTTAGCAACTGTTGAAAA
TATTTCTTTTGAATTATCTAAAGGAGAAGTTTTGGGTATAGTAGGGGAATCTGGTTGCGGTAAGTCCATATTAAGTAAGT
CAATTATTAAATTATTACCAGAAAAGATATCTAAACTAAGTAATGGAGAAGTTATATTTGATGGTAAACGAATCGATACG
CTCAATGAGAAGCAATTGCTAGATATTCGAGGAAATGATATTGCTATGATTTTTCAAGAACCTATGACTGCTTTAAATCC
TGTATTTACCATAAAAAATCAACTTGTGGAATCTATAAAATCACATAAAAAAATTTCTAAAAAAGAAGCAAATAACTTAG
CAAAAGATTTACTAAAAAAAGTTGGAATTGCTAGACAAGATGAAATATTAAATAGCTATCCTCATCAATTATCTGGTGGT
ATGAGACAAAGAGTAATGATTGCAATGGCCATTTCATGTTCTCCTAAATTATTAATTGCTGATGAACCTACAACAGCATT
GGATGTCACGATTCAAGCGCAAATATTAGACTTATTAAAAGAATTGCAAAAGGAAACGCAAATGGCAATTATGATGATTA
CACATGATTTGAGTGTAGTTGCTGAGTTTTGCGATAAAGTCTTAGTTATGTATGCAGGTCAAATTGTAGAATTTGGAGGC
ATAAAAGAAATACTACACAATCCGAAACATCCTTATACCCAAAAATTATTATCAACAATTCCAAAACTTAAAGAAGAGCA
GAAACGACTTGAAACGATAGAAGGAATTGTGCCATCAATCCAAGCATTTCACGTTAATAAGTGCAGATTTGCAAATAGAT
GTAACAAAAAAATGGATATTTGTAATAATCAATCTCCTAAAATGCATGTTTGTGAAGACGTCATTGTACGTTGTCATTTG
TACAAAAATGAATATAAGGAGATATAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(236-301)

ABC transporter (ABC_tran)

(26-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

44.551

95.122

0.424
  oppD Streptococcus mutans UA159

44.66

94.207

0.421
  amiE Streptococcus thermophilus LMG 18311

43.91

95.122

0.418
  amiE Streptococcus thermophilus LMD-9

43.91

95.122

0.418