Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PQQ28_RS16315 Genome accession   NZ_CP117235
Coordinates   3262170..3262799 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain ATCC 25922     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3257170..3267799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQQ28_RS16300 (PQQ28_16300) helD 3257412..3259466 (-) 2055 WP_001443200.1 DNA helicase IV -
  PQQ28_RS16305 (PQQ28_16305) yccF 3259589..3260035 (+) 447 WP_001261236.1 YccF domain-containing protein -
  PQQ28_RS16310 (PQQ28_16310) yccS 3260045..3262207 (+) 2163 WP_000875041.1 YccS family putative transporter -
  PQQ28_RS16315 (PQQ28_16315) sxy/tfoX 3262170..3262799 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PQQ28_RS16320 (PQQ28_16320) sulA 3263018..3263527 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  PQQ28_RS16325 (PQQ28_16325) ompA 3263883..3264935 (+) 1053 WP_001528868.1 porin OmpA -
  PQQ28_RS16330 (PQQ28_16330) matP 3265013..3265465 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  PQQ28_RS16335 (PQQ28_16335) ycbZ 3265651..3267411 (+) 1761 WP_000156504.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=782987 PQQ28_RS16315 WP_000839136.1 3262170..3262799(-) (sxy/tfoX) [Escherichia coli strain ATCC 25922]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=782987 PQQ28_RS16315 WP_000839136.1 3262170..3262799(-) (sxy/tfoX) [Escherichia coli strain ATCC 25922]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99